Description : (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene synthase) - Gossypium hirsutum (Upland cotton) & (at4g16730 : 243.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 486.0) & (original description: no original description)
Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00003483-RA | |
Cluster | HCCA clusters: Cluster_150 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
412139 | No alias | Terpenoid cyclases/Protein prenyltransferases superfamily protein | 0.03 | Orthogroups_2024-Update | |
A4A49_07214 | No alias | (-)-alpha-terpineol synthase | 0.03 | Orthogroups_2024-Update | |
Brara.H00876.1 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.04 | Orthogroups_2024-Update | |
Glyma.12G102000 | No alias | terpene synthase-like sequence-1,8-cineole | 0.03 | Orthogroups_2024-Update | |
Glyma.13G304500 | No alias | terpene synthase 02 | 0.06 | Orthogroups_2024-Update | |
Glyma.13G321100 | No alias | terpene synthase 03 | 0.04 | Orthogroups_2024-Update | |
MA_10426551g0010 | No alias | (p59287|cass_ricco : 248.0) Casbene synthase,... | 0.05 | Orthogroups_2024-Update | |
MA_10435955g0010 | No alias | (o04408|ksa_pea : 162.0) Ent-kaurene synthase A,... | 0.05 | Orthogroups_2024-Update | |
MA_10436878g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
MA_111325g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
MA_17608g0020 | No alias | (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene... | 0.05 | Orthogroups_2024-Update | |
MA_343069g0010 | No alias | (o04408|ksa_pea : 131.0) Ent-kaurene synthase A,... | 0.03 | Orthogroups_2024-Update | |
MA_491032g0010 | No alias | (at4g02780 : 134.0) Catalyzes the conversion of... | 0.03 | Orthogroups_2024-Update | |
MA_8002141g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
MA_9401581g0010 | No alias | (o04408|ksa_pea : 146.0) Ent-kaurene synthase A,... | 0.05 | Orthogroups_2024-Update | |
PSME_00003263-RA | No alias | (at4g02780 : 383.0) Catalyzes the conversion of... | 0.03 | Orthogroups_2024-Update | |
PSME_00004615-RA | No alias | (at4g02780 : 383.0) Catalyzes the conversion of... | 0.05 | Orthogroups_2024-Update | |
PSME_00010279-RA | No alias | (at4g02780 : 364.0) Catalyzes the conversion of... | 0.05 | Orthogroups_2024-Update | |
PSME_00017294-RA | No alias | (at4g02780 : 138.0) Catalyzes the conversion of... | 0.04 | Orthogroups_2024-Update | |
PSME_00029104-RA | No alias | (p59287|cass_ricco : 216.0) Casbene synthase,... | 0.04 | Orthogroups_2024-Update | |
PSME_00029466-RA | No alias | (at4g02780 : 394.0) Catalyzes the conversion of... | 0.04 | Orthogroups_2024-Update | |
PSME_00034701-RA | No alias | (p59287|cass_ricco : 249.0) Casbene synthase,... | 0.05 | Orthogroups_2024-Update | |
PSME_00037858-RA | No alias | (at4g16740 : 161.0) Encodes an (E,E)-alpha-farnesene... | 0.04 | Orthogroups_2024-Update | |
PSME_00041351-RA | No alias | (at1g70080 : 113.0) Terpenoid cyclases/Protein... | 0.08 | Orthogroups_2024-Update | |
PSME_00044370-RA | No alias | (at4g16730 : 128.0) In the Col ecotype, no functional... | 0.05 | Orthogroups_2024-Update | |
Potri.011G031800 | No alias | terpene synthase-like sequence-1,8-cineole | 0.04 | Orthogroups_2024-Update | |
Potri.T001000 | No alias | terpene synthase-like sequence-1,8-cineole | 0.02 | Orthogroups_2024-Update | |
Sobic.002G002300.1 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.03 | Orthogroups_2024-Update | |
Sobic.006G027500.2 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.03 | Orthogroups_2024-Update | |
Solyc01g105850 | No alias | (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... | 0.04 | Orthogroups_2024-Update | |
Solyc01g105900 | No alias | Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Solyc01g105920 | No alias | (E)-beta-ocimene synthase | 0.03 | Orthogroups_2024-Update | |
Solyc01g105960 | No alias | (E)-beta-ocimene synthase | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEA | InterProScan predictions |
MF | GO:0010333 | terpene synthase activity | IEA | InterProScan predictions |
MF | GO:0016829 | lyase activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Predicted GO |
BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Predicted GO |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Predicted GO |
MF | GO:0004478 | methionine adenosyltransferase activity | IEP | Predicted GO |
MF | GO:0004568 | chitinase activity | IEP | Predicted GO |
BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006026 | aminoglycan catabolic process | IEP | Predicted GO |
BP | GO:0006030 | chitin metabolic process | IEP | Predicted GO |
BP | GO:0006032 | chitin catabolic process | IEP | Predicted GO |
BP | GO:0006040 | amino sugar metabolic process | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006536 | glutamate metabolic process | IEP | Predicted GO |
BP | GO:0006537 | glutamate biosynthetic process | IEP | Predicted GO |
BP | GO:0006555 | methionine metabolic process | IEP | Predicted GO |
BP | GO:0006556 | S-adenosylmethionine biosynthetic process | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
MF | GO:0008172 | S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008443 | phosphofructokinase activity | IEP | Predicted GO |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009056 | catabolic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009086 | methionine biosynthetic process | IEP | Predicted GO |
BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
BP | GO:0009690 | cytokinin metabolic process | IEP | Predicted GO |
BP | GO:0010817 | regulation of hormone levels | IEP | Predicted GO |
MF | GO:0015930 | glutamate synthase activity | IEP | Predicted GO |
BP | GO:0016053 | organic acid biosynthetic process | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Predicted GO |
MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Predicted GO |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
MF | GO:0019139 | cytokinin dehydrogenase activity | IEP | Predicted GO |
MF | GO:0019200 | carbohydrate kinase activity | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0034754 | cellular hormone metabolic process | IEP | Predicted GO |
MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0042445 | hormone metabolic process | IEP | Predicted GO |
BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | Predicted GO |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
BP | GO:0046348 | amino sugar catabolic process | IEP | Predicted GO |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Predicted GO |
BP | GO:0046500 | S-adenosylmethionine metabolic process | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0050664 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Predicted GO |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
No external refs found! |