Description : (at4g18780 : 1327.0) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.; IRREGULAR XYLEM 1 (IRX1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 7 processes; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase A4 (TAIR:AT5G44030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2654.0) & (original description: no original description)
Gene families : OG_42_0000159 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000159_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00003722-RA | |
Cluster | HCCA clusters: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
75715 | No alias | Cellulose synthase family protein | 0.02 | Orthogroups_2024-Update | |
A4A49_16242 | No alias | putative cellulose synthase a catalytic subunit 3 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
A4A49_22443 | No alias | cellulose synthase a catalytic subunit 8 [udp-forming] | 0.07 | Orthogroups_2024-Update | |
A4A49_33993 | No alias | cellulose synthase a catalytic subunit 1 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
A4A49_36598 | No alias | cellulose synthase a catalytic subunit 3 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
At2g25540 | No alias | Cellulose synthase (Fragment)... | 0.03 | Orthogroups_2024-Update | |
At4g32410 | No alias | Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UWT4] | 0.03 | Orthogroups_2024-Update | |
At4g39350 | No alias | Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V4M9] | 0.03 | Orthogroups_2024-Update | |
At5g05170 | No alias | Cellulose synthase A catalytic subunit 3 [UDP-forming]... | 0.03 | Orthogroups_2024-Update | |
At5g17420 | No alias | Cellulose synthase (Fragment)... | 0.04 | Orthogroups_2024-Update | |
At5g44030 | No alias | cellulose synthase A4 [Source:TAIR;Acc:AT5G44030] | 0.03 | Orthogroups_2024-Update | |
Bradi2g49912 | No alias | cellulose synthase family protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g28350 | No alias | cellulose synthase A4 | 0.05 | Orthogroups_2024-Update | |
Bradi4g30540 | No alias | Cellulose synthase family protein | 0.04 | Orthogroups_2024-Update | |
Bradi5g10130 | No alias | cellulose synthase-like B4 | 0.03 | Orthogroups_2024-Update | |
Brara.C00769.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Brara.D01967.1 | No alias | glycosyltransferase *(CSLB/CSLH) | 0.03 | Orthogroups_2024-Update | |
Brara.F02346.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Brara.F03770.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Brara.K00426.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
GRMZM2G142898 | No alias | Cellulose synthase family protein | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G026330.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Kfl00459_0100 | kfl00459_0100_v1.1 | (at5g09870 : 1020.0) Encodes a cellulose synthase... | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g35020 | No alias | CSLH2 - cellulose synthase-like family H, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10429177g0010 | No alias | (at4g18780 : 1268.0) Encodes a member of the cellulose... | 0.06 | Orthogroups_2024-Update | |
MA_124460g0010 | No alias | (at5g17420 : 560.0) Encodes a xylem-specific cellulose... | 0.03 | Orthogroups_2024-Update | |
MA_140410g0010 | No alias | (at5g17420 : 1447.0) Encodes a xylem-specific cellulose... | 0.03 | Orthogroups_2024-Update | |
Potri.002G257900 | No alias | cellulose synthase A4 | 0.05 | Orthogroups_2024-Update | |
Potri.004G059600 | No alias | cellulose synthase family protein | 0.05 | Orthogroups_2024-Update | |
Potri.006G181900 | No alias | Cellulose synthase family protein | 0.05 | Orthogroups_2024-Update | |
Pp1s8_137V6 | No alias | cellulose synthase glycosyltransferase family 2 | 0.03 | Orthogroups_2024-Update | |
Seita.2G080900.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.08 | Orthogroups_2024-Update | |
Seita.2G115400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.2G209100.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Seita.3G102600.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Seita.4G213700.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.5G319100.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.02 | Orthogroups_2024-Update | |
Seita.9G227400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Sobic.001G224300.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Sobic.003G296400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Solyc12g056580 | No alias | Cellulose synthase (AHRD V3.3 *** M1AQH6_SOLTU) | 0.03 | Orthogroups_2024-Update | |
Sopen01g034270 | No alias | Cellulose synthase | 0.03 | Orthogroups_2024-Update | |
Sopen11g001530 | No alias | Cellulose synthase | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0016020 | membrane | IEA | InterProScan predictions |
MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEA | InterProScan predictions |
BP | GO:0030244 | cellulose biosynthetic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
MF | GO:0004568 | chitinase activity | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006026 | aminoglycan catabolic process | IEP | Predicted GO |
BP | GO:0006030 | chitin metabolic process | IEP | Predicted GO |
BP | GO:0006032 | chitin catabolic process | IEP | Predicted GO |
BP | GO:0006040 | amino sugar metabolic process | IEP | Predicted GO |
BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
MF | GO:0008146 | sulfotransferase activity | IEP | Predicted GO |
MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Predicted GO |
BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0010215 | cellulose microfibril organization | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
BP | GO:0016049 | cell growth | IEP | Predicted GO |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
MF | GO:0016157 | sucrose synthase activity | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | IEP | Predicted GO |
MF | GO:0016746 | transferase activity, transferring acyl groups | IEP | Predicted GO |
MF | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups | IEP | Predicted GO |
MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
BP | GO:0030198 | extracellular matrix organization | IEP | Predicted GO |
CC | GO:0031225 | anchored component of membrane | IEP | Predicted GO |
BP | GO:0040007 | growth | IEP | Predicted GO |
BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
BP | GO:0043062 | extracellular structure organization | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0046348 | amino sugar catabolic process | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
No external refs found! |