PSME_00003722-RA


Description : (at4g18780 : 1327.0) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.; IRREGULAR XYLEM 1 (IRX1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 7 processes; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase A4 (TAIR:AT5G44030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2654.0) & (original description: no original description)


Gene families : OG_42_0000159 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003722-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
75715 No alias Cellulose synthase family protein 0.02 Orthogroups_2024-Update
A4A49_16242 No alias putative cellulose synthase a catalytic subunit 3 [udp-forming] 0.03 Orthogroups_2024-Update
A4A49_22443 No alias cellulose synthase a catalytic subunit 8 [udp-forming] 0.07 Orthogroups_2024-Update
A4A49_33993 No alias cellulose synthase a catalytic subunit 1 [udp-forming] 0.03 Orthogroups_2024-Update
A4A49_36598 No alias cellulose synthase a catalytic subunit 3 [udp-forming] 0.03 Orthogroups_2024-Update
At2g25540 No alias Cellulose synthase (Fragment)... 0.03 Orthogroups_2024-Update
At4g32410 No alias Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UWT4] 0.03 Orthogroups_2024-Update
At4g39350 No alias Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V4M9] 0.03 Orthogroups_2024-Update
At5g05170 No alias Cellulose synthase A catalytic subunit 3 [UDP-forming]... 0.03 Orthogroups_2024-Update
At5g17420 No alias Cellulose synthase (Fragment)... 0.04 Orthogroups_2024-Update
At5g44030 No alias cellulose synthase A4 [Source:TAIR;Acc:AT5G44030] 0.03 Orthogroups_2024-Update
Bradi2g49912 No alias cellulose synthase family protein 0.02 Orthogroups_2024-Update
Bradi3g28350 No alias cellulose synthase A4 0.05 Orthogroups_2024-Update
Bradi4g30540 No alias Cellulose synthase family protein 0.04 Orthogroups_2024-Update
Bradi5g10130 No alias cellulose synthase-like B4 0.03 Orthogroups_2024-Update
Brara.C00769.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Brara.D01967.1 No alias glycosyltransferase *(CSLB/CSLH) 0.03 Orthogroups_2024-Update
Brara.F02346.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Brara.F03770.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Brara.K00426.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
GRMZM2G142898 No alias Cellulose synthase family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G026330.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00459_0100 kfl00459_0100_v1.1 (at5g09870 : 1020.0) Encodes a cellulose synthase... 0.02 Orthogroups_2024-Update
LOC_Os04g35020 No alias CSLH2 - cellulose synthase-like family H, expressed 0.02 Orthogroups_2024-Update
MA_10429177g0010 No alias (at4g18780 : 1268.0) Encodes a member of the cellulose... 0.06 Orthogroups_2024-Update
MA_124460g0010 No alias (at5g17420 : 560.0) Encodes a xylem-specific cellulose... 0.03 Orthogroups_2024-Update
MA_140410g0010 No alias (at5g17420 : 1447.0) Encodes a xylem-specific cellulose... 0.03 Orthogroups_2024-Update
Potri.002G257900 No alias cellulose synthase A4 0.05 Orthogroups_2024-Update
Potri.004G059600 No alias cellulose synthase family protein 0.05 Orthogroups_2024-Update
Potri.006G181900 No alias Cellulose synthase family protein 0.05 Orthogroups_2024-Update
Pp1s8_137V6 No alias cellulose synthase glycosyltransferase family 2 0.03 Orthogroups_2024-Update
Seita.2G080900.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.08 Orthogroups_2024-Update
Seita.2G115400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.2G209100.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Seita.3G102600.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Seita.4G213700.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.5G319100.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.02 Orthogroups_2024-Update
Seita.9G227400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Sobic.001G224300.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Sobic.003G296400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Solyc12g056580 No alias Cellulose synthase (AHRD V3.3 *** M1AQH6_SOLTU) 0.03 Orthogroups_2024-Update
Sopen01g034270 No alias Cellulose synthase 0.03 Orthogroups_2024-Update
Sopen11g001530 No alias Cellulose synthase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016760 cellulose synthase (UDP-forming) activity IEA InterProScan predictions
BP GO:0030244 cellulose biosynthetic process IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005150 Cellulose_synth 259 963
IPR027934 CES_Znf_RING 6 67
No external refs found!