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  5. PSME_00004747-RA

PSME_00004747-RA


Description : (at5g61930 : 320.0) ACCUMULATION OF PHOTOSYSTEM ONE 3; ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)


Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004747-RA
Cluster HCCA clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45970 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.06 Orthogroups_2024-Update
MA_45379g0010 No alias (at3g21740 : 316.0) ACCUMULATION OF PHOTOSYSTEM ONE 4;... 0.03 Orthogroups_2024-Update
PSME_00008412-RA No alias (at5g61930 : 369.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;... 0.05 Orthogroups_2024-Update
PSME_00015410-RA No alias (at5g61930 : 368.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;... 0.05 Orthogroups_2024-Update
Potri.006G183900 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.02 Orthogroups_2024-Update
Potri.017G037200 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.02 Orthogroups_2024-Update
Seita.1G309900.1 No alias organelle RNA splicing factor *(APO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR023342 APO_dom 293 407
IPR023342 APO_dom 419 604
IPR023342 APO_dom 68 246
No external refs found!