1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00004812-RA

PSME_00004812-RA


Description : (at4g23750 : 92.4) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.; cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004812-RA
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
68470 No alias ethylene responsive element binding factor 1 0.03 Orthogroups_2024-Update
80895 No alias ethylene responsive element binding factor 2 0.03 Orthogroups_2024-Update
A4A49_13998 No alias ethylene-responsive transcription factor 4 0.03 Orthogroups_2024-Update
A4A49_17425 No alias dehydration-responsive element-binding protein 2a 0.02 Orthogroups_2024-Update
A4A49_24642 No alias ethylene-responsive transcription factor rap2-11 0.03 Orthogroups_2024-Update
A4A49_39586 No alias ethylene-responsive transcription factor erf106 0.03 Orthogroups_2024-Update
At2g33710 No alias Integrase-type DNA-binding superfamily protein... 0.02 Orthogroups_2024-Update
At2g47520 No alias Ethylene-responsive transcription factor ERF071... 0.02 Orthogroups_2024-Update
At3g11020 No alias Dehydration-responsive element-binding protein 2B... 0.02 Orthogroups_2024-Update
At3g61630 No alias CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2] 0.03 Orthogroups_2024-Update
At4g18450 No alias Ethylene-responsive transcription factor ERF091... 0.02 Orthogroups_2024-Update
At5g07310 No alias Ethylene-responsive transcription factor ERF115... 0.02 Orthogroups_2024-Update
At5g11590 No alias Dehydration-responsive element-binding protein 3... 0.03 Orthogroups_2024-Update
At5g18450 No alias Dehydration-responsive element-binding protein 2G... 0.03 Orthogroups_2024-Update
At5g51190 No alias Ethylene-responsive transcription factor ERF105... 0.03 Orthogroups_2024-Update
Bradi1g72449 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g60331 No alias C-repeat/DRE binding factor 1 0.02 Orthogroups_2024-Update
Bradi4g31040 No alias related to AP2 2 0.03 Orthogroups_2024-Update
Bradi4g41616 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g24110 No alias related to AP2 10 0.02 Orthogroups_2024-Update
Brara.A00041.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Brara.A00380.1 No alias subgroup ERF-X transcription factor 0.02 Orthogroups_2024-Update
Brara.B00174.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.B03207.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.02 Orthogroups_2024-Update
Brara.C00211.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.C01453.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Brara.C01524.1 No alias transcription factor *(CBF/DREB1) & subgroup ERF-III... 0.03 Orthogroups_2024-Update
Brara.C02660.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.02 Orthogroups_2024-Update
Brara.C03562.1 No alias subgroup ERF-VIII transcription factor 0.05 Orthogroups_2024-Update
Brara.C04275.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.D00278.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.02 Orthogroups_2024-Update
Brara.D00707.1 No alias subgroup ERF-I transcription factor 0.04 Orthogroups_2024-Update
Brara.D01886.1 No alias subgroup ERF-IX transcription factor 0.04 Orthogroups_2024-Update
Brara.E00471.1 No alias subgroup ERF-III transcription factor 0.04 Orthogroups_2024-Update
Brara.E01243.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.F03559.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.F03560.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.G02253.1 No alias subgroup ERF-II transcription factor *(ERF16/17/18) 0.03 Orthogroups_2024-Update
Brara.G03123.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
Brara.G03526.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H01997.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Brara.I03370.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J00058.1 No alias subgroup ERF-III transcription factor 0.04 Orthogroups_2024-Update
Cre14.g620500 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G039870 No alias related to AP2 4 0.03 Orthogroups_2024-Update
GRMZM2G053503 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G057386 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
GRMZM2G085678 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G438202 No alias ethylene responsive element binding factor 4 0.03 Orthogroups_2024-Update
GRMZM2G481668 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G261700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G116700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G062900 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G063600 No alias ethylene responsive element binding factor 1 0.02 Orthogroups_2024-Update
Glyma.06G068800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G156200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G250100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G137600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G216600 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G123100 No alias ethylene response factor 1 0.02 Orthogroups_2024-Update
Glyma.15G077100 No alias erf domain protein 9 0.04 Orthogroups_2024-Update
Glyma.19G142000 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G195900 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G203500 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G055710.1 No alias subgroup ERF-IX transcription factor 0.06 Orthogroups_2024-Update
HORVU1Hr1G067110.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G094780.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G098330.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G071890.2 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G060140.1 No alias subgroup ERF-I transcription factor 0.05 Orthogroups_2024-Update
HORVU7Hr1G037180.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
LOC_Os03g09170 No alias ethylene-responsive transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g60120 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g46400 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g40150 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g43210 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g41060 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_121581g0010 No alias (at1g22190 : 103.0) Integrase-type DNA-binding... 0.03 Orthogroups_2024-Update
MA_2446g0010 No alias (at2g20880 : 136.0) Integrase-type DNA-binding... 0.04 Orthogroups_2024-Update
MA_4032g0010 No alias (q9sxs8|erf3_tobac : 85.1) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_78784g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00004892-RA No alias (at1g19210 : 123.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00008862-RA No alias (q6k7e6|erf1_orysa : 93.6) Ethylene-responsive... 0.03 Orthogroups_2024-Update
PSME_00037661-RA No alias (at4g17500 : 149.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
Potri.003G161000 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.004G141200 No alias redox responsive transcription factor 1 0.04 Orthogroups_2024-Update
Pp1s487_24V6 No alias ap2 erf domain-containing transcription factor 0.01 Orthogroups_2024-Update
Pp1s53_80V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G187900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G138400.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.2G215500.1 No alias subgroup ERF-VII transcription factor & transcription... 0.02 Orthogroups_2024-Update
Seita.3G281000.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G289200.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Seita.5G115000.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.02 Orthogroups_2024-Update
Seita.9G516700.1 No alias subgroup ERF-VII transcription factor & transcription... 0.04 Orthogroups_2024-Update
Sobic.003G297600.1 No alias subgroup ERF-IX transcription factor 0.04 Orthogroups_2024-Update
Sobic.004G297100.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G319700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc05g052050 No alias DNA-binding protein Pti4 0.03 Orthogroups_2024-Update
Solyc07g049490 No alias Ethylene Response Factor F.3 0.03 Orthogroups_2024-Update
Solyc11g011740 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc12g056980 No alias Ethylene-responsive element binding-factor (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen04g024720 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen04g027740 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen04g032240 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g030600 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen07g024840 No alias AP2 domain 0.06 Orthogroups_2024-Update
Sopen08g004160 No alias AP2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 175 225
No external refs found!