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  5. PSME_00005164-RA

PSME_00005164-RA


Description : (at5g05390 : 649.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p24792|aso_cucma : 230.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 1298.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005164-RA
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
78002 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
80214 No alias laccase 12 0.02 Orthogroups_2024-Update
95740 No alias laccase 17 0.02 Orthogroups_2024-Update
A4A49_13107 No alias laccase-14 0.04 Orthogroups_2024-Update
A4A49_20277 No alias laccase-11 0.04 Orthogroups_2024-Update
A4A49_21564 No alias laccase-15 0.03 Orthogroups_2024-Update
At2g29130 No alias Laccase-2 [Source:UniProtKB/Swiss-Prot;Acc:O81081] 0.04 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.03 Orthogroups_2024-Update
At5g01190 No alias Laccase-10 [Source:UniProtKB/Swiss-Prot;Acc:Q6ID18] 0.02 Orthogroups_2024-Update
At5g07130 No alias Laccase-13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYQ2] 0.02 Orthogroups_2024-Update
At5g09360 No alias Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79] 0.03 Orthogroups_2024-Update
At5g60020 No alias Laccase-17 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD5] 0.04 Orthogroups_2024-Update
Bradi1g66720 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.01 Orthogroups_2024-Update
Bradi2g54690 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi2g54740 No alias laccase 2 0.02 Orthogroups_2024-Update
Bradi4g39330 No alias laccase 7 0.03 Orthogroups_2024-Update
Brara.B00033.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Brara.H02436.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
GRMZM2G336337 No alias laccase 12 0.03 Orthogroups_2024-Update
Glyma.01G108200 No alias laccase 7 0.03 Orthogroups_2024-Update
Glyma.01G112600 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Glyma.01G173600 No alias laccase 11 0.02 Orthogroups_2024-Update
Glyma.03G073778 No alias laccase 7 0.02 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.08G359100 No alias laccase 17 0.04 Orthogroups_2024-Update
Glyma.11G233400 No alias laccase 5 0.03 Orthogroups_2024-Update
Glyma.14G056100 No alias laccase 5 0.02 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.02 Orthogroups_2024-Update
Glyma.18G183700 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.18G193300 No alias laccase 7 0.03 Orthogroups_2024-Update
Glyma.18G197400 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G072470.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
HORVU3Hr1G086160.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
LOC_Os01g27700 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g62480 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g16610 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g38420 No alias laccase precursor protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g30140 No alias laccase-16, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g15680 No alias laccase precursor protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430789g0010 No alias (at5g05390 : 429.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.06 Orthogroups_2024-Update
MA_67291g0010 No alias (at5g05390 : 697.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_75861g0010 No alias (at1g18140 : 648.0) putative laccase, a member of... 0.07 Orthogroups_2024-Update
MA_897132g0010 No alias (at2g40370 : 560.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.03 Orthogroups_2024-Update
PSME_00013183-RA No alias (at5g60020 : 725.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00013635-RA No alias (at5g05390 : 645.0) putative laccase, a member of... 0.07 Orthogroups_2024-Update
PSME_00013636-RA No alias (at2g40370 : 639.0) putative laccase, a member of... 0.08 Orthogroups_2024-Update
PSME_00018934-RA No alias (at5g05390 : 747.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00019807-RA No alias (at5g05390 : 589.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00024478-RA No alias (at5g05390 : 702.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00026986-RA No alias (at5g05390 : 621.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00030935-RA No alias (at5g05390 : 627.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
PSME_00031560-RA No alias (at5g05390 : 678.0) putative laccase, a member of... 0.07 Orthogroups_2024-Update
PSME_00033093-RA No alias (at2g40370 : 637.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00033274-RA No alias (at5g03260 : 805.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00042619-RA No alias (at5g05390 : 581.0) putative laccase, a member of... 0.08 Orthogroups_2024-Update
PSME_00044158-RA No alias (at2g40370 : 673.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00044448-RA No alias (at5g05390 : 808.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.001G206200 No alias laccase 14 0.03 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.007G023300 No alias laccase 11 0.03 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.009G034500 No alias laccase 2 0.03 Orthogroups_2024-Update
Pp1s17_180V6 No alias laccase 90c 0.02 Orthogroups_2024-Update
Seita.1G320600.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.3G218000.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Seita.4G282400.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.5G457800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.7G330200.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.001G422300.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.003G352700.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Sobic.004G236100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Solyc02g062650 No alias Laccase (AHRD V3.3 *** I1J8U1_SOYBN) 0.02 Orthogroups_2024-Update
Solyc05g052340 No alias Laccase (AHRD V3.3 *** K4C1R5_SOLLC) 0.02 Orthogroups_2024-Update
Solyc06g076330 No alias Laccase (AHRD V3.3 *** M1CZK5_SOLTU) 0.02 Orthogroups_2024-Update
Sopen02g029800 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update
Sopen02g029810 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update
Sopen04g028460 No alias Multicopper oxidase 0.03 Orthogroups_2024-Update
Sopen06g033630 No alias Multicopper oxidase 0.03 Orthogroups_2024-Update
Sopen06g033640 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 170 320
IPR011707 Cu-oxidase_3 45 157
IPR011706 Cu-oxidase_2 425 559
No external refs found!