Description : (at3g62980 : 633.0) Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.; TRANSPORT INHIBITOR RESPONSE 1 (TIR1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: GRR1-like protein 1 (TAIR:AT4G03190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1266.0) & (original description: no original description)
Gene families : OG_42_0000339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000339_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00005246-RA | |
Cluster | HCCA clusters: Cluster_86 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
168175 | No alias | auxin signaling F-box 2 | 0.02 | Orthogroups_2024-Update | |
75487 | No alias | RNI-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
A4A49_03444 | No alias | coronatine-insensitive protein 1 | 0.02 | Orthogroups_2024-Update | |
At2g39940 | No alias | Coronatine-insensitive protein 1... | 0.03 | Orthogroups_2024-Update | |
Bradi1g67160 | No alias | RNI-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.C02040.1 | No alias | component *(COI) of jasmonic acid receptor complex | 0.04 | Orthogroups_2024-Update | |
Brara.I04357.1 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) | 0.02 | Orthogroups_2024-Update | |
Glyma.03G209400 | No alias | F-box/RNI-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.06G095400 | No alias | auxin F-box protein 5 | 0.03 | Orthogroups_2024-Update | |
Glyma.16G050500 | No alias | auxin signaling F-box 3 | 0.03 | Orthogroups_2024-Update | |
Glyma.19G100200 | No alias | auxin signaling F-box 3 | 0.03 | Orthogroups_2024-Update | |
Kfl00434_0030 | kfl00434_0030_v1.1 | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update | |
LOC_Os01g63420 | No alias | OsFBL4 - F-box domain and LRR containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10427099g0010 | No alias | (at2g39940 : 141.0) Encodes a protein containing... | 0.02 | Orthogroups_2024-Update | |
MA_121693g0010 | No alias | (at5g49980 : 727.0) auxin F-box protein 5 (AFB5);... | 0.04 | Orthogroups_2024-Update | |
MA_14836g0010 | No alias | (at3g62980 : 733.0) Encodes an auxin receptor that... | 0.03 | Orthogroups_2024-Update | |
MA_47869g0020 | No alias | (at4g24390 : 219.0) RNI-like superfamily protein; BEST... | 0.03 | Orthogroups_2024-Update | |
MA_78902g0010 | No alias | (at5g49980 : 364.0) auxin F-box protein 5 (AFB5);... | 0.04 | Orthogroups_2024-Update | |
Mp6g02750.1 | No alias | component TIR1/AFB of auxin receptor complex. component... | 0.02 | Orthogroups_2024-Update | |
Potri.004G033900 | No alias | F-box/RNI-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Potri.014G134800 | No alias | F-box/RNI-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s12_347V6 | No alias | coronitine insensitive 1 | 0.04 | Orthogroups_2024-Update | |
Pp1s196_87V6 | No alias | f-box family protein | 0.02 | Orthogroups_2024-Update | |
Pp1s24_60V6 | No alias | coronitine insensitive 1 | 0.02 | Orthogroups_2024-Update | |
Pp1s3_119V6 | No alias | xfb2 gene for F-box protein XFB2 | 0.02 | Orthogroups_2024-Update | |
Pp1s49_196V6 | No alias | TLP3A TIR1-like auxin receptor protein | 0.02 | Orthogroups_2024-Update | |
Seita.7G078300.1 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G359600.1 | No alias | component *(COI) of jasmonic acid receptor complex | 0.04 | Orthogroups_2024-Update | |
Sobic.009G157200.1 | No alias | component *(COI) of jasmonic acid receptor complex | 0.03 | Orthogroups_2024-Update | |
Solyc06g008470 | No alias | Protein TRANSPORT INHIBITOR RESPONSE 1 (AHRD V3.3 *-* TIR1_ARATH) | 0.03 | Orthogroups_2024-Update | |
Sopen02g023990 | No alias | Leucine Rich repeat | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
MF | GO:0005319 | lipid transporter activity | IEP | Predicted GO |
BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006479 | protein methylation | IEP | Predicted GO |
BP | GO:0006869 | lipid transport | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
MF | GO:0019829 | cation-transporting ATPase activity | IEP | Predicted GO |
MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0042592 | homeostatic process | IEP | Predicted GO |
MF | GO:0042625 | ATPase coupled ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | Predicted GO |
BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Predicted GO |
BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0061024 | membrane organization | IEP | Predicted GO |
MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
BP | GO:0120009 | intermembrane lipid transfer | IEP | Predicted GO |
MF | GO:0120013 | intermembrane lipid transfer activity | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |