PSME_00005358-RA

Description : (at3g04920 : 189.0) Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)

Gene families : OG_42_0001483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001483_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00005358-RA
Cluster	HCCA clusters: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
227903	No alias	Ribosomal protein S24e family protein	0.03	Orthogroups_2024-Update
271584	No alias	Ribosomal protein S24e family protein	0.09	Orthogroups_2024-Update
A4A49_64768	No alias	40s ribosomal protein s24-1	0.07	Orthogroups_2024-Update
At3g04920	No alias	40S ribosomal protein S24-1...	0.06	Orthogroups_2024-Update
Bradi1g38010	No alias	Ribosomal protein S24e family protein	0.04	Orthogroups_2024-Update
Bradi3g08680	No alias	Ribosomal protein S24e family protein	0.12	Orthogroups_2024-Update
Brara.A03743.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.B03525.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.E03413.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.F02892.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.I00438.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Cre10.g456200	No alias	Ribosomal protein S24e family protein	0.18	Orthogroups_2024-Update
GRMZM2G151252	No alias	Ribosomal protein S24e family protein	0.05	Orthogroups_2024-Update
GRMZM2G171426	No alias	Ribosomal protein S24e family protein	0.09	Orthogroups_2024-Update
Glyma.03G245300	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
Glyma.10G160300	No alias	Ribosomal protein S24e family protein	0.13	Orthogroups_2024-Update
Glyma.19G242700	No alias	Ribosomal protein S24e family protein	0.07	Orthogroups_2024-Update
Glyma.20G228100	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
HORVU6Hr1G044840.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
HORVU7Hr1G088580.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Kfl00638_0040	kfl00638_0040_v1.1	(at3g04920 : 195.0) Ribosomal protein S24e family...	0.04	Orthogroups_2024-Update
LOC_Os06g36160	No alias	40S ribosomal protein S24, putative, expressed	0.03	Orthogroups_2024-Update
MA_119841g0010	No alias	(at3g04920 : 158.0) Ribosomal protein S24e family...	0.03	Orthogroups_2024-Update
MA_119894g0010	No alias	(at3g04920 : 188.0) Ribosomal protein S24e family...	0.07	Orthogroups_2024-Update
Potri.010G087800	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
Potri.013G036100	No alias	Ribosomal protein S24e family protein	0.07	Orthogroups_2024-Update
Pp1s13_236V6	No alias	40s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s204_49V6	No alias	40s ribosomal protein	0.13	Orthogroups_2024-Update
Pp1s37_112V6	No alias	40s ribosomal protein	0.18	Orthogroups_2024-Update
Pp1s450_3V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s450_9V6	No alias	40s ribosomal protein	0.2	Orthogroups_2024-Update
Seita.1G028300.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Seita.4G181700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Seita.5G301700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.003G280700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Sobic.004G099500.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Sobic.010G166100.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Solyc01g097870	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4B0H4_SOLLC)	0.07	Orthogroups_2024-Update
Solyc06g084230	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CUG0_SOLLC)	0.1	Orthogroups_2024-Update
Solyc09g065330	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CAS8_SOLLC)	0.15	Orthogroups_2024-Update
Sopen01g041470	No alias	Ribosomal protein S24e	0.05	Orthogroups_2024-Update
Sopen09g027090	No alias	Ribosomal protein S24e	0.09	Orthogroups_2024-Update
evm.model.contig_2036.17	No alias	(at3g04920 : 137.0) Ribosomal protein S24e family...	0.2	Orthogroups_2024-Update
evm.model.tig00000361.64	No alias	(at3g04920 : 129.0) Ribosomal protein S24e family...	0.16	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0010921	regulation of phosphatase activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019212	phosphatase inhibitor activity	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0035303	regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predicted GO
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0051336	regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	65	143

External Links

No external refs found!

PSME_00005358-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation