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- PSME_00005399-RA
PSME_00005399-RA
Description : (p52780|syq_luplu : 280.0) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS) - Lupinus luteus (European yellow lupin) & (at1g25350 : 262.0) ovule abortion 9 (OVA9); CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1). & (reliability: 524.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Pseudotsuga release: PSME_00005399-RA | |
Cluster | HCCA clusters: Cluster_93 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Sopen05g004940 | No alias | tRNA synthetases class I (E and Q), catalytic domain | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
CC | GO:0005575 | cellular_component | None | Extended |
CC | GO:0005737 | cytoplasm | IEA | InterProScan predictions |
BP | GO:0006082 | organic acid metabolic process | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006399 | tRNA metabolic process | None | Extended |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | InterProScan predictions |
BP | GO:0006520 | cellular amino acid metabolic process | None | Extended |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
MF | GO:0008144 | drug binding | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016070 | RNA metabolic process | None | Extended |
MF | GO:0016874 | ligase activity | None | Extended |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
BP | GO:0019752 | carboxylic acid metabolic process | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034660 | ncRNA metabolic process | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
BP | GO:0043038 | amino acid activation | None | Extended |
BP | GO:0043039 | tRNA aminoacylation | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0043436 | oxoacid metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044281 | small molecule metabolic process | None | Extended |
CC | GO:0044424 | intracellular part | None | Extended |
CC | GO:0044464 | cell part | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
MF | GO:0140101 | catalytic activity, acting on a tRNA | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
CC | GO:0000139 | Golgi membrane | IEP | Predicted GO |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Predicted GO |
BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006006 | glucose metabolic process | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006906 | vesicle fusion | IEP | Predicted GO |
BP | GO:0006914 | autophagy | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008565 | protein transporter activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0016050 | vesicle organization | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
BP | GO:0016197 | endosomal transport | IEP | Predicted GO |
BP | GO:0016482 | cytosolic transport | IEP | Predicted GO |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
BP | GO:0019318 | hexose metabolic process | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Predicted GO |
CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | Predicted GO |
BP | GO:0048284 | organelle fusion | IEP | Predicted GO |
MF | GO:0050661 | NADP binding | IEP | Predicted GO |
BP | GO:0051641 | cellular localization | IEP | Predicted GO |
BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
BP | GO:0061024 | membrane organization | IEP | Predicted GO |
BP | GO:0061025 | membrane fusion | IEP | Predicted GO |
BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Predicted GO |
BP | GO:0090174 | organelle membrane fusion | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR020059 | Glu/Gln-tRNA-synth_Ib_codon-bd | 3 | 150 |