PSME_00006177-RA

Description : (at5g53950 : 292.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 228.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 556.0) & (original description: no original description)

Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00006177-RA

Target	Alias	Description	ECC score	Gene Family Method
A4A49_58267	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
At1g71930	No alias	NAC domain-containing protein 30...	0.03	Orthogroups_2024-Update
At1g76420	No alias	Protein CUP-SHAPED COTYLEDON 3...	0.03	Orthogroups_2024-Update
Brara.F01598.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F03613.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J00883.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J02074.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G082709	No alias	NAC domain containing protein 71	0.03	Orthogroups_2024-Update
Glyma.18G043900	No alias	NAC domain containing protein 28	0.03	Orthogroups_2024-Update
HORVU2Hr1G045580.8	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Mp4g11910.1	No alias	transcription factor (NAC)	0.01	Orthogroups_2024-Update
PSME_00036701-RA	No alias	(at1g65910 : 296.0) NAC domain containing protein 28...	0.1	Orthogroups_2024-Update
PSME_00045671-RA	No alias	(at1g12260 : 268.0) Encodes a NAC-domain transcription...	0.06	Orthogroups_2024-Update
PSME_00050582-RA	No alias	(at5g53950 : 267.0) Transcriptional activator of the NAC...	0.05	Orthogroups_2024-Update
Potri.008G031800	No alias	NAC domain containing protein 2	0.02	Orthogroups_2024-Update
Potri.014G104800	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
Pp1s161_73V6	No alias	nac domain-containing	0.02	Orthogroups_2024-Update
Pp1s223_12V6	No alias	nac domain ipr003441	0.02	Orthogroups_2024-Update
Pp1s44_300V6	No alias	nac domain ipr003441	0.02	Orthogroups_2024-Update
Solyc06g034340	No alias	NAC domain protein, (AHRD V3.3 *** A0A061G781_THECC)	0.02	Orthogroups_2024-Update
Solyc06g069710	No alias	NAC domain protein, (AHRD V3.3 *** A0A061FWI7_THECC)	0.06	Orthogroups_2024-Update
Solyc08g008660	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	18	144

External Links

No external refs found!

PSME_00006177-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation