Description : (at1g20720 : 86.3) RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)
Gene families : OG_42_0002822 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002822_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00006713-RA | |
Cluster | HCCA clusters: Cluster_169 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_08820 | No alias | dna repair helicase xpd | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEA | InterProScan predictions |
MF | GO:0008026 | ATP-dependent helicase activity | IEA | InterProScan predictions |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006555 | ATP-dep_Helicase_C | 3 | 37 |
No external refs found! |