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  5. PSME_00006809-RA

PSME_00006809-RA


Description : (at1g23460 : 407.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4; Bacteria - 1235; Metazoa - 14; Fungi - 1418; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (p35336|pglr_actch : 383.0) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Actinidia chinensis (Kiwi) (Yangtao) & (reliability: 814.0) & (original description: no original description)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00006809-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_04568 No alias polygalacturonase-2 0.02 Orthogroups_2024-Update
A4A49_14444 No alias putative polygalacturonase 0.06 Orthogroups_2024-Update
A4A49_27120 No alias putative polygalacturonase 0.06 Orthogroups_2024-Update
At5g27530 No alias Pectin lyase-like superfamily protein... 0.04 Orthogroups_2024-Update
Bradi1g04641 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g18030 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.H02210.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.11G162574 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G140600 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
PSME_00006810-RA No alias (p35336|pglr_actch : 159.0) Polygalacturonase precursor... 0.03 Orthogroups_2024-Update
Potri.011G159000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Sopen04g007600 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 109 431
No external refs found!