PSME_00007174-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00007174-RA
Cluster	HCCA clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
69510	No alias	GATA transcription factor 20	0.02	Orthogroups_2024-Update
A4A49_19992	No alias	gata transcription factor 5	0.03	Orthogroups_2024-Update
Brara.K00682.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Glyma.04G008900	No alias	GATA transcription factor 7	0.02	Orthogroups_2024-Update
Glyma.17G228700	No alias	cytokinin-responsive gata factor 1	0.03	Orthogroups_2024-Update
HORVU6Hr1G088370.6	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
PSME_00026073-RA	No alias	(at5g66320 : 163.0) Encodes GATA transcription factor...	0.04	Orthogroups_2024-Update
PSME_00040152-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
PSME_00051947-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Potri.018G053600	No alias	GATA type zinc finger transcription factor family protein	0.02	Orthogroups_2024-Update
Seita.1G358400.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Seita.3G175200.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Seita.7G183600.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Sobic.006G162800.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	Predicted GO
BP	GO:0003352	regulation of cilium movement	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0007033	vacuole organization	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
BP	GO:0016197	endosomal transport	IEP	Predicted GO
BP	GO:0016482	cytosolic transport	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
CC	GO:0030906	retromer, cargo-selective complex	IEP	Predicted GO
BP	GO:0032879	regulation of localization	IEP	Predicted GO
BP	GO:0032886	regulation of microtubule-based process	IEP	Predicted GO
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
BP	GO:0051270	regulation of cellular component movement	IEP	Predicted GO
BP	GO:0060632	regulation of microtubule-based movement	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
BP	GO:1905037	autophagosome organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	189	223

External Links

No external refs found!

PSME_00007174-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation