Description : (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 145.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1134.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00007181-RA | |
Cluster | HCCA clusters: Cluster_210 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
82255 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g12697 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A02436.1 | No alias | RNA editing factor *(CRR2) | 0.04 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
Glyma.01G173200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.12G005600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G028520.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G113840.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g46980 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_103380g0010 | No alias | (at3g24000 : 608.0) Tetratricopeptide repeat (TPR)-like... | 0.08 | Orthogroups_2024-Update | |
MA_10430355g0010 | No alias | (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_11454g0010 | No alias | (at4g13650 : 676.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_13022g0010 | No alias | (at2g13600 : 530.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_139163g0010 | No alias | (at4g13650 : 549.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_285318g0010 | No alias | (at4g18750 : 489.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_381817g0020 | No alias | (at2g22070 : 544.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_385322g0010 | No alias | (at1g08070 : 385.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
MA_57048g0010 | No alias | (at3g09040 : 636.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_653417g0010 | No alias | (at4g13650 : 731.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_658463g0010 | No alias | (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_7907g0020 | No alias | (at3g57430 : 717.0) Encodes a chloroplast RNA editing... | 0.06 | Orthogroups_2024-Update | |
MA_9258g0010 | No alias | (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_9354530g0010 | No alias | (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... | 0.05 | Orthogroups_2024-Update | |
MA_94165g0010 | No alias | (at1g11290 : 612.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_99849g0010 | No alias | (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00018763-RA | No alias | (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00031504-RA | No alias | (at3g23330 : 207.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00047584-RA | No alias | (at4g33170 : 422.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Potri.006G244500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.1G158100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.3G069000.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.5G242100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G548100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen10g003810 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
BP | GO:0042592 | homeostatic process | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Predicted GO |
BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 714 | 739 |
IPR002885 | Pentatricopeptide_repeat | 639 | 686 |
IPR002885 | Pentatricopeptide_repeat | 134 | 181 |
IPR002885 | Pentatricopeptide_repeat | 235 | 281 |
IPR002885 | Pentatricopeptide_repeat | 437 | 475 |
IPR002885 | Pentatricopeptide_repeat | 336 | 383 |
IPR002885 | Pentatricopeptide_repeat | 538 | 585 |
No external refs found! |