Description : (at2g22070 : 594.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 120.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1108.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00007543-RA | |
Cluster | HCCA clusters: Cluster_42 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
150456 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi4g40340 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi4g44712 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G144100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G019130.5 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g39970 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
MA_114722g0010 | No alias | (at1g11290 : 600.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_12023g0010 | No alias | (at4g02750 : 731.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_127785g0010 | No alias | (at2g03880 : 512.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_193080g0010 | No alias | (at4g33170 : 603.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
MA_27726g0010 | No alias | (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
MA_28051g0010 | No alias | (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_322292g0010 | No alias | (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_32723g0010 | No alias | (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_472579g0010 | No alias | (at4g33170 : 615.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_502206g0010 | No alias | (at1g20230 : 427.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_9354530g0010 | No alias | (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_95261g0010 | No alias | (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00013800-RA | No alias | (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00016832-RA | No alias | (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00032004-RA | No alias | (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... | 0.04 | Orthogroups_2024-Update | |
Potri.014G191200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Sobic.001G149100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.003G047400.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G119100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.003G337200.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G380100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.009G136200.1 | No alias | RNA editing factor *(MEF32) | 0.02 | Orthogroups_2024-Update | |
Sobic.010G067000.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
Solyc09g010070 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001671 | ATPase activator activity | IEP | Predicted GO |
CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0006479 | protein methylation | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 451 | 474 |
IPR002885 | Pentatricopeptide_repeat | 145 | 173 |
IPR002885 | Pentatricopeptide_repeat | 117 | 143 |
IPR002885 | Pentatricopeptide_repeat | 516 | 545 |
IPR032867 | DYW_dom | 549 | 673 |
IPR002885 | Pentatricopeptide_repeat | 376 | 422 |
IPR002885 | Pentatricopeptide_repeat | 274 | 322 |
IPR002885 | Pentatricopeptide_repeat | 175 | 220 |
No external refs found! |