PSME_00007653-RA

Description : (at5g15520 : 237.0) Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT3G02080.1); Has 1130 Blast hits to 1130 proteins in 395 species: Archae - 215; Bacteria - 1; Metazoa - 402; Fungi - 149; Plants - 164; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). & (p40978|rs19_orysa : 224.0) 40S ribosomal protein S19 - Oryza sativa (Rice) & (reliability: 474.0) & (original description: no original description)

Gene families : OG_42_0001908 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00007653-RA
Cluster	HCCA clusters: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
153225	No alias	Ribosomal protein S19e family protein	0.17	Orthogroups_2024-Update
A4A49_38035	No alias	40s ribosomal protein s19-3	0.12	Orthogroups_2024-Update
A4A49_60647	No alias	40s ribosomal protein s19-3	0.09	Orthogroups_2024-Update
Bradi3g56527	No alias	Ribosomal protein S19e family protein	0.09	Orthogroups_2024-Update
Bradi4g08690	No alias	Ribosomal protein S19e family protein	0.05	Orthogroups_2024-Update
Brara.A03915.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.C02969.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Brara.C04231.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Brara.E03604.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.I00650.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Cre02.g106600	No alias	Ribosomal protein S19e family protein	0.19	Orthogroups_2024-Update
Glyma.04G132900	No alias	Ribosomal protein S19e family protein	0.18	Orthogroups_2024-Update
Glyma.11G158500	No alias	Ribosomal protein S19e family protein	0.1	Orthogroups_2024-Update
Glyma.13G057500	No alias	Ribosomal protein S19e family protein	0.18	Orthogroups_2024-Update
Glyma.19G028700	No alias	Ribosomal protein S19e family protein	0.08	Orthogroups_2024-Update
HORVU5Hr1G052240.6	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Kfl00035_0260	kfl00035_0260_v1.1	(at3g02080 : 166.0) Ribosomal protein S19e family...	0.06	Orthogroups_2024-Update
LOC_Os03g31090	No alias	40S ribosomal protein S19, putative, expressed	0.03	Orthogroups_2024-Update
MA_10427917g0010	No alias	(at3g02080 : 247.0) Ribosomal protein S19e family...	0.12	Orthogroups_2024-Update
MA_10427917g0020	No alias	(at5g15520 : 163.0) Ribosomal protein S19e family...	0.04	Orthogroups_2024-Update
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.09	Orthogroups_2024-Update
Potri.004G118800	No alias	Ribosomal protein S19e family protein	0.04	Orthogroups_2024-Update
Potri.015G056100	No alias	Ribosomal protein S19e family protein	0.05	Orthogroups_2024-Update
Potri.017G092200	No alias	Ribosomal protein S19e family protein	0.1	Orthogroups_2024-Update
Pp1s21_363V6	No alias	40s ribosomal protein s19	0.25	Orthogroups_2024-Update
Pp1s34_111V6	No alias	40s ribosomal protein s19	0.15	Orthogroups_2024-Update
Pp1s54_217V6	No alias	40s ribosomal protein s19	0.13	Orthogroups_2024-Update
Pp1s84_153V6	No alias	40s ribosomal protein s19	0.19	Orthogroups_2024-Update
Pp1s98_182V6	No alias	40s ribosomal protein s19	0.19	Orthogroups_2024-Update
Seita.2G151200.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Seita.9G361400.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Seita.9G575800.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Sobic.001G334300.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Sobic.007G178600.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Solyc03g115360	No alias	40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)	0.2	Orthogroups_2024-Update
Solyc12g039120	No alias	40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)	0.14	Orthogroups_2024-Update
Sopen03g034360	No alias	Ribosomal protein S19e	0.11	Orthogroups_2024-Update
Sopen12g019420	No alias	Ribosomal protein S19e	0.18	Orthogroups_2024-Update
evm.model.contig_3407.10	No alias	(at3g02080 : 155.0) Ribosomal protein S19e family...	0.22	Orthogroups_2024-Update
evm.model.tig00021017.6	No alias	(at3g02080 : 183.0) Ribosomal protein S19e family...	0.22	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	6	140

External Links

No external refs found!

PSME_00007653-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation