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  5. PSME_00007895-RA

PSME_00007895-RA


Description : (p29063|pr4b_tobac : 193.0) Pathogenesis-related protein PR-4B precursor - Nicotiana tabacum (Common tobacco) & (at3g04720 : 185.0) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.; pathogenesis-related 4 (PR4); FUNCTIONS IN: chitin binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin (InterPro:IPR001153), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726), Barwin-related endoglucanase (InterPro:IPR009009), Chitin-binding, type 1, conserved site (InterPro:IPR018371), Barwin-like endoglucanase (InterPro:IPR014733), Barwin, conserved site (InterPro:IPR018226), Chitin-binding, type 1 (InterPro:IPR001002); BEST Arabidopsis thaliana protein match is: basic chitinase (TAIR:AT3G12500.1); Has 1702 Blast hits to 1458 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 253; Plants - 1414; Viruses - 10; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description)


Gene families : OG_42_0001762 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001762_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007895-RA
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Bradi4g14920 No alias pathogenesis-related 4 0.02 Orthogroups_2024-Update
Brara.C03070.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G117971 No alias pathogenesis-related 4 0.04 Orthogroups_2024-Update
Glyma.20G225200 No alias pathogenesis-related 4 0.03 Orthogroups_2024-Update
HORVU3Hr1G113120.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os11g37970 No alias WIP5 - Wound-induced protein precursor, expressed 0.02 Orthogroups_2024-Update
MA_10428528g0010 No alias (at3g04720 : 124.0) Encodes a protein similar to the... 0.06 Orthogroups_2024-Update
MA_10434174g0010 No alias (p29063|pr4b_tobac : 207.0) Pathogenesis-related protein... 0.03 Orthogroups_2024-Update
MA_321399g0010 No alias (p09761|win1_soltu : 201.0) Wound-induced protein WIN1... 0.03 Orthogroups_2024-Update
MA_8035959g0010 No alias (p29063|pr4b_tobac : 191.0) Pathogenesis-related protein... 0.03 Orthogroups_2024-Update
Mp2g21910.1 No alias Hevein-like preproprotein OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00054279-RA No alias (p09761|win1_soltu : 201.0) Wound-induced protein WIN1... 0.09 Orthogroups_2024-Update
Seita.8G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G170000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G170100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.005G157400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G169200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G169400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g097280 No alias Pathogenesis-related protein PR-4 (AHRD V3.3 *** PR4_PRUPE) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0042742 defense response to bacterium IEA InterProScan predictions
BP GO:0050832 defense response to fungus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001153 Barwin_dom 17 132
No external refs found!