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  5. PSME_00008232-RA

PSME_00008232-RA


Description : (at5g02310 : 269.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 538.0) & (original description: no original description)


Gene families : OG_42_0002846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008232-RA
Cluster HCCA clusters: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03180 No alias proteolysis 6 0.02 Orthogroups_2024-Update
Brara.J02887.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.02 Orthogroups_2024-Update
GRMZM2G438938 No alias proteolysis 6 0.02 Orthogroups_2024-Update
Glyma.07G132300 No alias proteolysis 6 0.05 Orthogroups_2024-Update
HORVU3Hr1G013300.5 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.02 Orthogroups_2024-Update
Kfl00338_0040 kfl00338_0040_v1.1 (at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.01 Orthogroups_2024-Update
Mp7g16320.1 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.02 Orthogroups_2024-Update
Pp1s356_43V6 No alias ubiquitin ligase e3 0.02 Orthogroups_2024-Update
Pp1s67_180V6 No alias ubiquitin ligase e3 0.03 Orthogroups_2024-Update
Seita.5G102700.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.04 Orthogroups_2024-Update
Sobic.003G072200.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.04 Orthogroups_2024-Update
evm.model.contig_3503.1 No alias (at5g02310 : 104.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update
evm.model.tig00001107.13 No alias (at5g02310 : 113.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!