Description : (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 144.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1392.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00009521-RA | |
Cluster | HCCA clusters: Cluster_42 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
150456 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
51483 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
96927 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
A4A49_26813 | No alias | putative pentatricopeptide repeat-containing protein,... | 0.03 | Orthogroups_2024-Update | |
Bradi4g44712 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G161368 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G176523 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G423538 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G455587 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.03G239200 | No alias | mitochondrial editing factor 19 | 0.02 | Orthogroups_2024-Update | |
Glyma.04G129100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G078900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.09G088000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.17G175800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g11700 | No alias | pentatricopeptide repeat domain containing protein,... | 0.02 | Orthogroups_2024-Update | |
MA_118590g0010 | No alias | (at3g24000 : 399.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_135075g0020 | No alias | (at3g57430 : 714.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_175688g0010 | No alias | (at3g23330 : 531.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_193080g0010 | No alias | (at4g33170 : 603.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_20746g0010 | No alias | (at1g11290 : 522.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_385322g0010 | No alias | (at1g08070 : 385.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
MA_668740g0020 | No alias | (at3g13770 : 627.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_67032g0010 | No alias | (at3g12770 : 625.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_767209g0010 | No alias | (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
MA_89214g0010 | No alias | (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_97789g0010 | No alias | (at3g26540 : 452.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Pp1s15_448V6 | No alias | MZB10.7; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G433600.1 | No alias | RNA editing factor *(OTP72) | 0.04 | Orthogroups_2024-Update | |
Sobic.007G006800.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.009G238700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc01g007850 | No alias | Pentatricopeptide repeat superfamily protein, putative... | 0.03 | Orthogroups_2024-Update | |
Sopen03g033730 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g034990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen04g026710 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen07g017190 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006479 | protein methylation | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 402 | 442 |
IPR032867 | DYW_dom | 820 | 944 |
IPR002885 | Pentatricopeptide_repeat | 721 | 745 |
IPR002885 | Pentatricopeptide_repeat | 521 | 543 |
IPR002885 | Pentatricopeptide_repeat | 444 | 491 |
IPR002885 | Pentatricopeptide_repeat | 343 | 391 |
IPR002885 | Pentatricopeptide_repeat | 646 | 694 |
IPR002885 | Pentatricopeptide_repeat | 545 | 589 |
IPR002885 | Pentatricopeptide_repeat | 142 | 189 |
IPR002885 | Pentatricopeptide_repeat | 242 | 288 |
No external refs found! |