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Description : (at3g10340 : 932.0) Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).; phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4898 Blast hits to 4876 proteins in 1415 species: Archae - 40; Bacteria - 2975; Metazoa - 80; Fungi - 127; Plants - 1177; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink). & (p24481|pal1_petcr : 931.0) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 1864.0) & (original description: no original description)
Gene families : OG_42_0000392 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000392_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00011716-RA | |
| Cluster | HCCA clusters: Cluster_150 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_26864 | No alias | phenylalanine ammonia-lyase | 0.06 | Orthogroups_2024-Update | |
| A4A49_27559 | No alias | phenylalanine ammonia-lyase | 0.05 | Orthogroups_2024-Update | |
| At2g37040 | No alias | Phenylalanine ammonia-lyase 1... | 0.03 | Orthogroups_2024-Update | |
| At3g53260 | No alias | Phenylalanine ammonia-lyase 2... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g49250 | No alias | PHE ammonia lyase 1 | 0.02 | Orthogroups_2024-Update | |
| Bradi3g49260 | No alias | PHE ammonia lyase 1 | 0.06 | Orthogroups_2024-Update | |
| Bradi5g15830 | No alias | PHE ammonia lyase 1 | 0.04 | Orthogroups_2024-Update | |
| Brara.B00136.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.D02252.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G081582 | No alias | PHE ammonia lyase 1 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G160541 | No alias | phenylalanine ammonia-lyase 4 | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G334660 | No alias | PHE ammonia lyase 1 | 0.02 | Orthogroups_2024-Update | |
| Glyma.10G209800 | No alias | phenylalanine ammonia-lyase 2 | 0.02 | Orthogroups_2024-Update | |
| Glyma.20G180800 | No alias | phenylalanine ammonia-lyase 2 | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G089440.4 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G058840.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.05 | Orthogroups_2024-Update | |
| LOC_Os04g43760 | No alias | phenylalanine ammonia-lyase, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g33610 | No alias | phenylalanine ammonia-lyase, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_10429279g0010 | No alias | (p24481|pal1_petcr : 914.0) Phenylalanine ammonia-lyase... | 0.05 | Orthogroups_2024-Update | |
| MA_123220g0010 | No alias | (p24481|pal1_petcr : 912.0) Phenylalanine ammonia-lyase... | 0.06 | Orthogroups_2024-Update | |
| MA_15852g0010 | No alias | (p25872|pal1_tobac : 829.0) Phenylalanine ammonia-lyase... | 0.03 | Orthogroups_2024-Update | |
| PSME_00022739-RA | No alias | (at3g10340 : 547.0) Encodes PAL4, a putative a... | 0.05 | Orthogroups_2024-Update | |
| PSME_00056212-RA | No alias | (p35513|pal2_tobac : 803.0) Phenylalanine ammonia-lyase... | 0.04 | Orthogroups_2024-Update | |
| Potri.008G038200 | No alias | PHE ammonia lyase 1 | 0.03 | Orthogroups_2024-Update | |
| Potri.010G224200 | No alias | PHE ammonia lyase 1 | 0.03 | Orthogroups_2024-Update | |
| Potri.016G091100 | No alias | PHE ammonia lyase 1 | 0.04 | Orthogroups_2024-Update | |
| Pp1s22_3V6 | No alias | phenylalanine ammonia-lyase | 0.02 | Orthogroups_2024-Update | |
| Pp1s494_3V6 | No alias | phenylalanine ammonia-lyase | 0.03 | Orthogroups_2024-Update | |
| Pp1s52_44V6 | No alias | phenylalanine ammonia-lyase | 0.02 | Orthogroups_2024-Update | |
| Seita.1G240200.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Seita.1G240300.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Seita.1G240400.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Seita.1G240500.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.06 | Orthogroups_2024-Update | |
| Seita.1G240600.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Seita.6G181000.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G220300.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G220500.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G220600.2 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G148900.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc05g056170 | No alias | phenylalanine ammonia-lyase 2 | 0.03 | Orthogroups_2024-Update | |
| Solyc09g007910 | No alias | Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) | 0.06 | Orthogroups_2024-Update | |
| Solyc09g007920 | No alias | Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) | 0.03 | Orthogroups_2024-Update | |
| Solyc10g086180 | No alias | Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL2_TOBAC) | 0.03 | Orthogroups_2024-Update | |
| Sopen09g002740 | No alias | Aromatic amino acid lyase | 0.03 | Orthogroups_2024-Update | |
| Sopen09g002750 | No alias | Aromatic amino acid lyase | 0.02 | Orthogroups_2024-Update | |
| Sopen10g035560 | No alias | Aromatic amino acid lyase | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
| MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Predicted GO |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
| MF | GO:0004478 | methionine adenosyltransferase activity | IEP | Predicted GO |
| MF | GO:0004601 | peroxidase activity | IEP | Predicted GO |
| MF | GO:0004612 | phosphoenolpyruvate carboxykinase (ATP) activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006555 | methionine metabolic process | IEP | Predicted GO |
| BP | GO:0006556 | S-adenosylmethionine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006605 | protein targeting | IEP | Predicted GO |
| BP | GO:0006612 | protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
| BP | GO:0006950 | response to stress | IEP | Predicted GO |
| BP | GO:0006979 | response to oxidative stress | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008172 | S-methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008312 | 7S RNA binding | IEP | Predicted GO |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009086 | methionine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
| MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
| BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016209 | antioxidant activity | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
| MF | GO:0020037 | heme binding | IEP | Predicted GO |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Predicted GO |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
| MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0045047 | protein targeting to ER | IEP | Predicted GO |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0046500 | S-adenosylmethionine metabolic process | IEP | Predicted GO |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0046983 | protein dimerization activity | IEP | Predicted GO |
| MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
| CC | GO:0048500 | signal recognition particle | IEP | Predicted GO |
| MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
| BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
| MF | GO:0051287 | NAD binding | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Predicted GO |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Predicted GO |
| BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001106 | Aromatic_Lyase | 63 | 539 |
| No external refs found! |