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  5. PSME_00014343-RA

PSME_00014343-RA


Description : (at1g08190 : 125.0) Might be involved in protein sorting to the vacuole.; vacuolar protein sorting 41 (VPS41); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding; INVOLVED IN: gravitropism, protein targeting to vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 13288 Blast hits to 4251 proteins in 360 species: Archae - 4; Bacteria - 340; Metazoa - 7814; Fungi - 1141; Plants - 584; Viruses - 346; Other Eukaryotes - 3059 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)


Gene families : OG_42_0004060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004060_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014343-RA
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
424584 No alias vacuolar protein sorting 41 0.05 Orthogroups_2024-Update
evm.model.contig_626.2 No alias (at1g08190 : 125.0) Might be involved in protein sorting... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!