PSME_00014399-RA

Description : (at5g53950 : 274.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 217.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 528.0) & (original description: no original description)

Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00014399-RA
Cluster	HCCA clusters: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11542	No alias	nac domain-containing protein 37	0.03	Orthogroups_2024-Update
A4A49_26375	No alias	protein sombrero	0.03	Orthogroups_2024-Update
A4A49_37618	No alias	nac domain-containing protein 86	0.06	Orthogroups_2024-Update
A4A49_58267	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
At1g62700	No alias	NAC domain-containing protein 26...	0.03	Orthogroups_2024-Update
At1g71930	No alias	NAC domain-containing protein 30...	0.04	Orthogroups_2024-Update
At1g76420	No alias	Protein CUP-SHAPED COTYLEDON 3...	0.03	Orthogroups_2024-Update
At4g10350	No alias	Protein BEARSKIN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV87]	0.03	Orthogroups_2024-Update
At5g09330	No alias	NAC domain-containing protein 82...	0.03	Orthogroups_2024-Update
At5g46590	No alias	NAC domain-containing protein 96...	0.03	Orthogroups_2024-Update
Bradi1g50057	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Brara.A00921.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.B02268.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.B03811.1	No alias	NAC-type transcription factor	0.05	Orthogroups_2024-Update
Brara.G00213.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G03438.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I00688.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.J00883.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G082709	No alias	NAC domain containing protein 71	0.04	Orthogroups_2024-Update
GRMZM2G139700	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
GRMZM2G176677	No alias	NAC domain containing protein 82	0.03	Orthogroups_2024-Update
GRMZM5G885329	No alias	NAC domain containing protein 57	0.03	Orthogroups_2024-Update
Glyma.02G070600	No alias	Arabidopsis NAC domain containing protein 87	0.03	Orthogroups_2024-Update
Glyma.05G055900	No alias	NAC 007	0.03	Orthogroups_2024-Update
Glyma.09G235700	No alias	NAC domain containing protein 100	0.03	Orthogroups_2024-Update
Glyma.12G226500	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.15G264100	No alias	NAC domain containing protein 20	0.04	Orthogroups_2024-Update
Glyma.18G043900	No alias	NAC domain containing protein 28	0.03	Orthogroups_2024-Update
Glyma.18G261300	No alias	NAC domain containing protein 100	0.03	Orthogroups_2024-Update
LOC_Os02g15340	No alias	no apical meristem protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g04090	No alias	no apical meristem protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g48550	No alias	no apical meristem protein, putative, expressed	0.02	Orthogroups_2024-Update
Potri.001G448400	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.003G113000	No alias	NAC 007	0.03	Orthogroups_2024-Update
Potri.011G115400	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.011G153300	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.014G104800	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
Potri.015G004100	No alias	NAC domain containing protein 62	0.03	Orthogroups_2024-Update
Potri.015G030200	No alias	NAC domain containing protein 57	0.04	Orthogroups_2024-Update
Pp1s1_447V6	No alias	nac domain ipr003441	0.03	Orthogroups_2024-Update
Pp1s223_12V6	No alias	nac domain ipr003441	0.02	Orthogroups_2024-Update
Pp1s227_100V6	No alias	nac domain ipr003441	0.04	Orthogroups_2024-Update
Pp1s279_85V6	No alias	no apical meristem	0.03	Orthogroups_2024-Update
Sobic.001G522700.2	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.002G421400.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Solyc06g034340	No alias	NAC domain protein, (AHRD V3.3 *** A0A061G781_THECC)	0.02	Orthogroups_2024-Update
Solyc08g008660	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Sopen06g011000	No alias	No apical meristem (NAM) protein	0.03	Orthogroups_2024-Update
Sopen11g003870	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006631	fatty acid metabolic process	IEP	Predicted GO
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0016887	ATPase activity	IEP	Predicted GO
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	25	151

External Links

No external refs found!

PSME_00014399-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation