Description : (at5g43820 : 423.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 33976 Blast hits to 11353 proteins in 260 species: Archae - 0; Bacteria - 8; Metazoa - 169; Fungi - 383; Plants - 32575; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink). & (q76c99|rf1_orysa : 155.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 846.0) & (original description: no original description)
Gene families : OG_42_0009617 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009617_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00014845-RA | |
Cluster | HCCA clusters: Cluster_17 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
MA_10433108g0010 | No alias | (at5g43820 : 343.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
BP | GO:0006508 | proteolysis | IEP | Predicted GO |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
MF | GO:0008233 | peptidase activity | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 346 | 393 |
IPR002885 | Pentatricopeptide_repeat | 276 | 325 |
IPR002885 | Pentatricopeptide_repeat | 490 | 519 |
IPR002885 | Pentatricopeptide_repeat | 176 | 204 |
IPR002885 | Pentatricopeptide_repeat | 248 | 273 |
IPR002885 | Pentatricopeptide_repeat | 420 | 449 |
IPR002885 | Pentatricopeptide_repeat | 455 | 483 |
IPR002885 | Pentatricopeptide_repeat | 213 | 240 |
No external refs found! |