PSME_00015179-RA


Description : (at5g17420 : 1472.0) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).; IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, secondary cell wall biogenesis, rhamnogalacturonan I side chain metabolic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2944.0) & (original description: no original description)


Gene families : OG_42_0000159 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015179-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
163575 No alias Cellulose synthase family protein 0.03 Orthogroups_2024-Update
A4A49_16242 No alias putative cellulose synthase a catalytic subunit 3 [udp-forming] 0.03 Orthogroups_2024-Update
A4A49_22443 No alias cellulose synthase a catalytic subunit 8 [udp-forming] 0.06 Orthogroups_2024-Update
A4A49_33993 No alias cellulose synthase a catalytic subunit 1 [udp-forming] 0.03 Orthogroups_2024-Update
A4A49_36598 No alias cellulose synthase a catalytic subunit 3 [udp-forming] 0.03 Orthogroups_2024-Update
At2g25540 No alias Cellulose synthase (Fragment)... 0.04 Orthogroups_2024-Update
At4g32410 No alias Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UWT4] 0.03 Orthogroups_2024-Update
At5g05170 No alias Cellulose synthase A catalytic subunit 3 [UDP-forming]... 0.03 Orthogroups_2024-Update
At5g17420 No alias Cellulose synthase (Fragment)... 0.05 Orthogroups_2024-Update
At5g44030 No alias cellulose synthase A4 [Source:TAIR;Acc:AT5G44030] 0.03 Orthogroups_2024-Update
Bradi2g49912 No alias cellulose synthase family protein 0.02 Orthogroups_2024-Update
Bradi3g28350 No alias cellulose synthase A4 0.07 Orthogroups_2024-Update
Bradi4g30540 No alias Cellulose synthase family protein 0.07 Orthogroups_2024-Update
Brara.C00769.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Brara.D01967.1 No alias glycosyltransferase *(CSLB/CSLH) 0.03 Orthogroups_2024-Update
Brara.D01969.1 No alias glycosyltransferase *(CSLB/CSLH) 0.02 Orthogroups_2024-Update
Brara.F02346.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Brara.F03770.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Brara.K00426.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
GRMZM2G445905 No alias cellulose synthase A4 0.02 Orthogroups_2024-Update
Glyma.15G157100 No alias cellulose synthase A4 0.02 Orthogroups_2024-Update
HORVU0Hr1G011610.1 No alias mannan synthase *(CSLD) 0.03 Orthogroups_2024-Update
HORVU1Hr1G026330.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00459_0100 kfl00459_0100_v1.1 (at5g09870 : 1020.0) Encodes a cellulose synthase... 0.02 Orthogroups_2024-Update
LOC_Os04g35020 No alias CSLH2 - cellulose synthase-like family H, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g32980 No alias CESA7 - cellulose synthase, expressed 0.02 Orthogroups_2024-Update
MA_10429177g0010 No alias (at4g18780 : 1268.0) Encodes a member of the cellulose... 0.07 Orthogroups_2024-Update
MA_124460g0010 No alias (at5g17420 : 560.0) Encodes a xylem-specific cellulose... 0.03 Orthogroups_2024-Update
MA_140410g0010 No alias (at5g17420 : 1447.0) Encodes a xylem-specific cellulose... 0.04 Orthogroups_2024-Update
Potri.002G257900 No alias cellulose synthase A4 0.05 Orthogroups_2024-Update
Potri.004G059600 No alias cellulose synthase family protein 0.05 Orthogroups_2024-Update
Potri.006G052600 No alias Cellulose synthase family protein 0.02 Orthogroups_2024-Update
Potri.006G181900 No alias Cellulose synthase family protein 0.05 Orthogroups_2024-Update
Pp1s112_75V6 No alias cellulose synthase glycosyltransferase family 2 0.02 Orthogroups_2024-Update
Pp1s8_137V6 No alias cellulose synthase glycosyltransferase family 2 0.03 Orthogroups_2024-Update
Seita.2G080900.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.08 Orthogroups_2024-Update
Seita.2G115400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Seita.2G209100.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Seita.3G102600.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.4G213700.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Seita.5G319100.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.9G020600.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.9G043900.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Seita.9G227400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.05 Orthogroups_2024-Update
Sobic.001G224300.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Sobic.002G205500.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.03 Orthogroups_2024-Update
Sobic.003G296400.1 No alias catalytic component *(CesA) of cellulose synthase complex 0.04 Orthogroups_2024-Update
Solyc09g072820 No alias Cellulose synthase (AHRD V3.3 *** M5VVD4_PRUPE) 0.03 Orthogroups_2024-Update
Solyc12g056580 No alias Cellulose synthase (AHRD V3.3 *** M1AQH6_SOLTU) 0.02 Orthogroups_2024-Update
Sopen01g034270 No alias Cellulose synthase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016760 cellulose synthase (UDP-forming) activity IEA InterProScan predictions
BP GO:0030244 cellulose biosynthetic process IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005150 Cellulose_synth 400 1116
IPR027934 CES_Znf_RING 65 141
No external refs found!