Description : (at5g17420 : 1472.0) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).; IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, secondary cell wall biogenesis, rhamnogalacturonan I side chain metabolic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2944.0) & (original description: no original description)
Gene families : OG_42_0000159 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000159_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00015179-RA | |
Cluster | HCCA clusters: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
163575 | No alias | Cellulose synthase family protein | 0.03 | Orthogroups_2024-Update | |
A4A49_16242 | No alias | putative cellulose synthase a catalytic subunit 3 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
A4A49_22443 | No alias | cellulose synthase a catalytic subunit 8 [udp-forming] | 0.06 | Orthogroups_2024-Update | |
A4A49_33993 | No alias | cellulose synthase a catalytic subunit 1 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
A4A49_36598 | No alias | cellulose synthase a catalytic subunit 3 [udp-forming] | 0.03 | Orthogroups_2024-Update | |
At2g25540 | No alias | Cellulose synthase (Fragment)... | 0.04 | Orthogroups_2024-Update | |
At4g32410 | No alias | Cellulose synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UWT4] | 0.03 | Orthogroups_2024-Update | |
At5g05170 | No alias | Cellulose synthase A catalytic subunit 3 [UDP-forming]... | 0.03 | Orthogroups_2024-Update | |
At5g17420 | No alias | Cellulose synthase (Fragment)... | 0.05 | Orthogroups_2024-Update | |
At5g44030 | No alias | cellulose synthase A4 [Source:TAIR;Acc:AT5G44030] | 0.03 | Orthogroups_2024-Update | |
Bradi2g49912 | No alias | cellulose synthase family protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g28350 | No alias | cellulose synthase A4 | 0.07 | Orthogroups_2024-Update | |
Bradi4g30540 | No alias | Cellulose synthase family protein | 0.07 | Orthogroups_2024-Update | |
Brara.C00769.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Brara.D01967.1 | No alias | glycosyltransferase *(CSLB/CSLH) | 0.03 | Orthogroups_2024-Update | |
Brara.D01969.1 | No alias | glycosyltransferase *(CSLB/CSLH) | 0.02 | Orthogroups_2024-Update | |
Brara.F02346.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Brara.F03770.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Brara.K00426.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
GRMZM2G445905 | No alias | cellulose synthase A4 | 0.02 | Orthogroups_2024-Update | |
Glyma.15G157100 | No alias | cellulose synthase A4 | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G011610.1 | No alias | mannan synthase *(CSLD) | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G026330.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Kfl00459_0100 | kfl00459_0100_v1.1 | (at5g09870 : 1020.0) Encodes a cellulose synthase... | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g35020 | No alias | CSLH2 - cellulose synthase-like family H, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os10g32980 | No alias | CESA7 - cellulose synthase, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10429177g0010 | No alias | (at4g18780 : 1268.0) Encodes a member of the cellulose... | 0.07 | Orthogroups_2024-Update | |
MA_124460g0010 | No alias | (at5g17420 : 560.0) Encodes a xylem-specific cellulose... | 0.03 | Orthogroups_2024-Update | |
MA_140410g0010 | No alias | (at5g17420 : 1447.0) Encodes a xylem-specific cellulose... | 0.04 | Orthogroups_2024-Update | |
Potri.002G257900 | No alias | cellulose synthase A4 | 0.05 | Orthogroups_2024-Update | |
Potri.004G059600 | No alias | cellulose synthase family protein | 0.05 | Orthogroups_2024-Update | |
Potri.006G052600 | No alias | Cellulose synthase family protein | 0.02 | Orthogroups_2024-Update | |
Potri.006G181900 | No alias | Cellulose synthase family protein | 0.05 | Orthogroups_2024-Update | |
Pp1s112_75V6 | No alias | cellulose synthase glycosyltransferase family 2 | 0.02 | Orthogroups_2024-Update | |
Pp1s8_137V6 | No alias | cellulose synthase glycosyltransferase family 2 | 0.03 | Orthogroups_2024-Update | |
Seita.2G080900.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.08 | Orthogroups_2024-Update | |
Seita.2G115400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Seita.2G209100.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Seita.3G102600.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.4G213700.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Seita.5G319100.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.9G020600.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.9G043900.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Seita.9G227400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.05 | Orthogroups_2024-Update | |
Sobic.001G224300.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Sobic.002G205500.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.03 | Orthogroups_2024-Update | |
Sobic.003G296400.1 | No alias | catalytic component *(CesA) of cellulose synthase complex | 0.04 | Orthogroups_2024-Update | |
Solyc09g072820 | No alias | Cellulose synthase (AHRD V3.3 *** M5VVD4_PRUPE) | 0.03 | Orthogroups_2024-Update | |
Solyc12g056580 | No alias | Cellulose synthase (AHRD V3.3 *** M1AQH6_SOLTU) | 0.02 | Orthogroups_2024-Update | |
Sopen01g034270 | No alias | Cellulose synthase | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0016020 | membrane | IEA | InterProScan predictions |
MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEA | InterProScan predictions |
BP | GO:0030244 | cellulose biosynthetic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
MF | GO:0004568 | chitinase activity | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006026 | aminoglycan catabolic process | IEP | Predicted GO |
BP | GO:0006030 | chitin metabolic process | IEP | Predicted GO |
BP | GO:0006032 | chitin catabolic process | IEP | Predicted GO |
BP | GO:0006040 | amino sugar metabolic process | IEP | Predicted GO |
BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Predicted GO |
BP | GO:0010215 | cellulose microfibril organization | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
MF | GO:0015267 | channel activity | IEP | Predicted GO |
BP | GO:0016049 | cell growth | IEP | Predicted GO |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0030198 | extracellular matrix organization | IEP | Predicted GO |
CC | GO:0031225 | anchored component of membrane | IEP | Predicted GO |
BP | GO:0040007 | growth | IEP | Predicted GO |
BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
BP | GO:0043062 | extracellular structure organization | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0046348 | amino sugar catabolic process | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
No external refs found! |