1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00015303-RA

PSME_00015303-RA


Description : (q08350|cadh7_picab : 209.0) Cinnamyl alcohol dehydrogenase 7/8 (EC 1.1.1.195) (CAD 7/8) - Picea abies (Norway spruce) (Picea excelsa) & (at4g37980 : 179.0) elicitor-activated gene 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: elicitor-activated gene 3-2 (TAIR:AT4G37990.1); Has 38486 Blast hits to 38464 proteins in 3055 species: Archae - 808; Bacteria - 25722; Metazoa - 1237; Fungi - 2883; Plants - 3069; Viruses - 3; Other Eukaryotes - 4764 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description)


Gene families : OG_42_0004404 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015303-RA
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre13.g564950 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 Orthogroups_2024-Update
Pp1s68_78V6 No alias elongation factor 2-like protein 0.01 Orthogroups_2024-Update
Sobic.004G168900.2 No alias regulatory GTPase (EFL1) of LSU processome 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013149 ADH_C 99 197
IPR013154 ADH_N 1 48
No external refs found!