Description : (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 219.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 944.0) & (original description: no original description)
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00015826-RA | |
Cluster | HCCA clusters: Cluster_215 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
155996 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | Orthogroups_2024-Update | |
177985 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | Orthogroups_2024-Update | |
440815 | No alias | chromatin remodeling 5 | 0.03 | Orthogroups_2024-Update | |
At3g06400 | No alias | Chromatin-remodeling complex ATPase... | 0.02 | Orthogroups_2024-Update | |
At5g18620 | No alias | Chromatin-remodeling complex ATPase... | 0.03 | Orthogroups_2024-Update | |
Bradi1g26940 | No alias | chromatin remodeling 4 | 0.04 | Orthogroups_2024-Update | |
Bradi1g44177 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
Glyma.05G131500 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
Glyma.07G252100 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Orthogroups_2024-Update | |
Glyma.11G004100 | No alias | Homeotic gene regulator | 0.04 | Orthogroups_2024-Update | |
Glyma.15G097000 | No alias | chromatin remodeling factor17 | 0.04 | Orthogroups_2024-Update | |
Glyma.17G022300 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G012850.1 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G041450.33 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.04 | Orthogroups_2024-Update | |
Kfl00590_0040 | kfl00590_0040_v1.1 | (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... | 0.03 | Orthogroups_2024-Update | |
MA_10429361g0010 | No alias | (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... | 0.04 | Orthogroups_2024-Update | |
Mp1g05480.1 | No alias | chromatin remodeling factor (Chd1). component CHR5 of... | 0.03 | Orthogroups_2024-Update | |
Mp2g26680.1 | No alias | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | Orthogroups_2024-Update | |
Mp4g00040.1 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | Orthogroups_2024-Update | |
Mp5g06580.2 | No alias | chromatin remodeling factor (Snf2) | 0.02 | Orthogroups_2024-Update | |
PSME_00036208-RA | No alias | (at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in... | 0.02 | Orthogroups_2024-Update | |
Pp1s360_39V6 | No alias | syd atpase chromatin binding | 0.03 | Orthogroups_2024-Update | |
Pp1s54_314V6 | No alias | snf2-family atp dependent chromatin remodeling factor snf21 | 0.02 | Orthogroups_2024-Update | |
Seita.2G320900.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.03 | Orthogroups_2024-Update | |
Seita.4G112400.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.04 | Orthogroups_2024-Update | |
Sobic.002G308700.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.03 | Orthogroups_2024-Update | |
Sobic.010G065300.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.03 | Orthogroups_2024-Update | |
Sobic.010G105200.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.05 | Orthogroups_2024-Update | |
Solyc06g065730 | No alias | chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
Sopen02g017710 | No alias | SNF2 family N-terminal domain | 0.02 | Orthogroups_2024-Update | |
Sopen12g034530 | No alias | SNF2 family N-terminal domain | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000545.10 | No alias | (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... | 0.01 | Orthogroups_2024-Update | |
evm.model.tig00000802.67 | No alias | (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEA | InterProScan predictions |
BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
MF | GO:0042393 | histone binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
MF | GO:0004402 | histone acetyltransferase activity | IEP | Predicted GO |
MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006338 | chromatin remodeling | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006473 | protein acetylation | IEP | Predicted GO |
BP | GO:0006475 | internal protein amino acid acetylation | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
MF | GO:0008080 | N-acetyltransferase activity | IEP | Predicted GO |
BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
BP | GO:0009725 | response to hormone | IEP | Predicted GO |
BP | GO:0009733 | response to auxin | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016573 | histone acetylation | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Predicted GO |
BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
MF | GO:0031491 | nucleosome binding | IEP | Predicted GO |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Predicted GO |
BP | GO:0042221 | response to chemical | IEP | Predicted GO |
BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Predicted GO |
BP | GO:0043543 | protein acylation | IEP | Predicted GO |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
No external refs found! |