Description : (at1g11290 : 683.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 142.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1366.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00016965-RA | |
Cluster | HCCA clusters: Cluster_146 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
74749 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
AC203841.3_FG002 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
At1g11290 | No alias | CRR22 [Source:UniProtKB/TrEMBL;Acc:A0A178WFR8] | 0.04 | Orthogroups_2024-Update | |
At1g31430 | No alias | Pentatricopeptide repeat-containing protein At1g31430... | 0.04 | Orthogroups_2024-Update | |
At4g33170 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.03 | Orthogroups_2024-Update | |
Bradi3g41651 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g59950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.F01240.1 | No alias | RNA editing factor *(CWM1) | 0.02 | Orthogroups_2024-Update | |
Brara.I02594.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
GRMZM2G073460 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM5G862936 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.07G127400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G141600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.09G286300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G085920.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G124580.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
MA_205762g0010 | No alias | (at4g02750 : 416.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_519985g0010 | No alias | (at3g03580 : 679.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Potri.002G237100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.1G311600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G047400.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G380100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003864 | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | IEP | Predicted GO |
MF | GO:0004347 | glucose-6-phosphate isomerase activity | IEP | Predicted GO |
MF | GO:0004807 | triose-phosphate isomerase activity | IEP | Predicted GO |
BP | GO:0006094 | gluconeogenesis | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
BP | GO:0015939 | pantothenate metabolic process | IEP | Predicted GO |
BP | GO:0015940 | pantothenate biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
CC | GO:0017119 | Golgi transport complex | IEP | Predicted GO |
BP | GO:0019319 | hexose biosynthetic process | IEP | Predicted GO |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0032784 | regulation of DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0032786 | positive regulation of DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0034243 | regulation of transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0045944 | positive regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0046364 | monosaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Predicted GO |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Predicted GO |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 667 | 791 |
IPR002885 | Pentatricopeptide_repeat | 568 | 592 |
IPR002885 | Pentatricopeptide_repeat | 393 | 441 |
IPR002885 | Pentatricopeptide_repeat | 192 | 236 |
IPR002885 | Pentatricopeptide_repeat | 495 | 541 |
IPR002885 | Pentatricopeptide_repeat | 292 | 337 |
IPR002885 | Pentatricopeptide_repeat | 94 | 137 |
No external refs found! |