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- Pseudotsuga menziesii
- Sequence
- PSME_00017054-RA
PSME_00017054-RA
Description : (q39857|xth_soybn : 137.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (at5g13870 : 136.0) EXGT-A4, endoxyloglucan transferase,; xyloglucan endotransglucosylase/hydrolase 5 (XTH5); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 4 (TAIR:AT2G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00017054-RA | |
| Cluster | HCCA clusters: Cluster_208 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Kfl00341_0120 | kfl00341_0120_v1.1 | (at2g33470 : 201.0) glycolipid transfer protein 1... | 0.02 | Orthogroups_2024-Update | |
| MA_403012g0010 | No alias | (at2g33470 : 183.0) glycolipid transfer protein 1... | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEA | InterProScan predictions |
| MF | GO:0005215 | transporter activity | None | Extended |
| MF | GO:0005319 | lipid transporter activity | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005737 | cytoplasm | IEA | InterProScan predictions |
| BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
| BP | GO:0006810 | transport | None | Extended |
| BP | GO:0006869 | lipid transport | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0016043 | cellular component organization | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| CC | GO:0044424 | intracellular part | None | Extended |
| CC | GO:0044464 | cell part | None | Extended |
| BP | GO:0051179 | localization | None | Extended |
| BP | GO:0051234 | establishment of localization | None | Extended |
| BP | GO:0061024 | membrane organization | None | Extended |
| BP | GO:0071702 | organic substance transport | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
| BP | GO:0120009 | intermembrane lipid transfer | IEA | InterProScan predictions |
| MF | GO:0120013 | intermembrane lipid transfer activity | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
| BP | GO:0006817 | phosphate ion transport | IEP | Predicted GO |
| BP | GO:0006820 | anion transport | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| BP | GO:0015698 | inorganic anion transport | IEP | Predicted GO |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
| MF | GO:0020037 | heme binding | IEP | Predicted GO |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR014830 | Glycolipid_transfer_prot_dom | 200 | 311 |
| IPR000757 | GH16 | 36 | 129 |
