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PSME_00017573-RA


Description : (at4g36690 : 242.0) ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1). & (reliability: 484.0) & (original description: no original description)


Gene families : OG_42_0001657 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001657_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017573-RA
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cre02.g093975 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Orthogroups_2024-Update
Kfl00054_0160 kfl00054_0160_v1.1 (at1g60900 : 445.0) U2 snRNP auxilliary factor, large... 0.02 Orthogroups_2024-Update
Seita.8G236800.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!