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  5. PSME_00018580-RA

PSME_00018580-RA


Description : (q76c99|rf1_orysa : 384.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (at5g39710 : 380.0) EMBRYO DEFECTIVE 2745 (EMB2745); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 65335 Blast hits to 15466 proteins in 320 species: Archae - 6; Bacteria - 88; Metazoa - 1398; Fungi - 1479; Plants - 59659; Viruses - 0; Other Eukaryotes - 2705 (source: NCBI BLink). & (reliability: 694.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018580-RA
Cluster HCCA clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
PSME_00009613-RA No alias (at1g62670 : 280.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0004399 histidinol dehydrogenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 102
IPR002885 Pentatricopeptide_repeat 279 310
IPR002885 Pentatricopeptide_repeat 105 136
IPR002885 Pentatricopeptide_repeat 212 261
IPR002885 Pentatricopeptide_repeat 458 506
IPR002885 Pentatricopeptide_repeat 318 366
IPR002885 Pentatricopeptide_repeat 387 436
IPR002885 Pentatricopeptide_repeat 142 191
IPR002885 Pentatricopeptide_repeat 598 646
IPR002885 Pentatricopeptide_repeat 527 576
No external refs found!