Sopen05g029470

Description : Ribosomal S13/S15 N-terminal domain

Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g029470
Cluster	HCCA clusters: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
440805	No alias	ribosomal protein S13A	0.11	Orthogroups_2024-Update
A4A49_64599	No alias	40s ribosomal protein s13	0.24	Orthogroups_2024-Update
At3g60770	No alias	40S ribosomal protein S13-1...	0.05	Orthogroups_2024-Update
Bradi3g13800	No alias	ribosomal protein S13A	0.08	Orthogroups_2024-Update
Bradi3g13810	No alias	ribosomal protein S13A	0.28	Orthogroups_2024-Update
Brara.D00142.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.D02734.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.E00496.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.3	Orthogroups_2024-Update
Brara.G01898.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.4	Orthogroups_2024-Update
Brara.I04191.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Cre07.g331900	No alias	ribosomal protein S13A	0.26	Orthogroups_2024-Update
GRMZM2G112050	No alias	ribosomal protein S13A	0.15	Orthogroups_2024-Update
GRMZM2G158034	No alias	ribosomal protein S13A	0.16	Orthogroups_2024-Update
GRMZM5G852185	No alias	ribosomal protein S13A	0.03	Orthogroups_2024-Update
Glyma.05G052300	No alias	ribosomal protein S13A	0.27	Orthogroups_2024-Update
Glyma.05G052400	No alias	ribosomal protein S13A	0.04	Orthogroups_2024-Update
Glyma.05G052600	No alias	ribosomal protein S13A	0.27	Orthogroups_2024-Update
HORVU7Hr1G075250.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.27	Orthogroups_2024-Update
Kfl00229_0020	kfl00229_0020_v1.1	(p62302\|rs13_soybn : 266.0) 40S ribosomal protein S13 -...	0.1	Orthogroups_2024-Update
LOC_Os08g02400	No alias	40S ribosomal protein S13, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os08g02410	No alias	40S ribosomal protein S13, putative, expressed	0.06	Orthogroups_2024-Update
MA_141232g0010	No alias	(p62302\|rs13_soybn : 291.0) 40S ribosomal protein S13 -...	0.2	Orthogroups_2024-Update
Mp4g03410.1	No alias	component RPS13 of SSU proteome	0.28	Orthogroups_2024-Update
PSME_00021950-RA	No alias	(p62302\|rs13_soybn : 223.0) 40S ribosomal protein S13 -...	0.12	Orthogroups_2024-Update
Potri.002G146800	No alias	Ribosomal protein S13/S15	0.05	Orthogroups_2024-Update
Potri.014G068600	No alias	Ribosomal protein S13/S15	0.08	Orthogroups_2024-Update
Potri.015G130000	No alias	ribosomal protein S13A	0.03	Orthogroups_2024-Update
Pp1s39_130V6	No alias	40s ribosomal protein s13	0.45	Orthogroups_2024-Update
Pp1s97_272V6	No alias	40s ribosomal protein s13	0.17	Orthogroups_2024-Update
Seita.6G084900.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.32	Orthogroups_2024-Update
Seita.6G085100.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Sobic.002G348100.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Sobic.007G019000.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.36	Orthogroups_2024-Update
Sobic.007G019400.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.35	Orthogroups_2024-Update
Solyc01g091220	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.04	Orthogroups_2024-Update
Solyc03g083530	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.05	Orthogroups_2024-Update
Solyc05g051000	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.21	Orthogroups_2024-Update
Solyc10g018250	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.04	Orthogroups_2024-Update
Solyc11g072260	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.15	Orthogroups_2024-Update
Sopen01g036970	No alias	Ribosomal S13/S15 N-terminal domain	0.06	Orthogroups_2024-Update
Sopen11g029930	No alias	Ribosomal S13/S15 N-terminal domain	0.09	Orthogroups_2024-Update
evm.model.contig_3443.6	No alias	(p62302\|rs13_soybn : 220.0) 40S ribosomal protein S13 -...	0.41	Orthogroups_2024-Update
evm.model.tig00000489.15	No alias	(p62302\|rs13_soybn : 183.0) 40S ribosomal protein S13 -...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000589	Ribosomal_S15	74	145
IPR012606	Ribosomal_S13/S15_N	1	60

External Links

No external refs found!

Sopen05g029470

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation