Description : (at5g01400 : 251.0) Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.; ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 502.0) & (original description: no original description)
Gene families : OG_42_0002144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002144_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00018866-RA | |
Cluster | HCCA clusters: Cluster_28 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g16570 | No alias | HEAT repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
Cre02.g099200 | No alias | HEAT repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
Glyma.04G089400 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
Sobic.002G430300.1 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | Orthogroups_2024-Update | |
Sopen04g030560 | No alias | Symplekin tight junction protein C terminal | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2286.8 | No alias | (at5g01400 : 123.0) Encodes a Symplekin/Pta1 homologue... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
CC | GO:0030117 | membrane coat | IEP | Predicted GO |
MF | GO:0030695 | GTPase regulator activity | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR022075 | Symplekin_C | 6 | 138 |
No external refs found! |