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  5. PSME_00019344-RA

PSME_00019344-RA


Description : "(at3g48590 : 200.0) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.; ""nuclear factor Y, subunit C1"" (NF-YC1); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C4 (TAIR:AT5G63470.2); Has 1348 Blast hits to 1348 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 449; Fungi - 353; Plants - 430; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)"


Gene families : OG_42_0000527 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019344-RA
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
At1g56170 No alias Nuclear transcription factor Y subunit C-2... 0.03 Orthogroups_2024-Update
At5g50480 No alias NF-YC6 [Source:UniProtKB/TrEMBL;Acc:A0A178UER5] 0.02 Orthogroups_2024-Update
Bradi4g33290 No alias nuclear factor Y, subunit C3 0.02 Orthogroups_2024-Update
LOC_Os03g14669 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g10560 No alias histone-like transcription factor and archaeal histone... 0.03 Orthogroups_2024-Update
Potri.005G035800 No alias nuclear factor Y, subunit C9 0.02 Orthogroups_2024-Update
Potri.013G025000 No alias nuclear factor Y, subunit C9 0.02 Orthogroups_2024-Update
Seita.2G247700.1 No alias component *(NF-YC) of NF-Y transcription factor complex 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 109 172
No external refs found!