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  5. PSME_00022139-RA

PSME_00022139-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000349 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022139-RA
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Bradi3g23180 No alias jasmonate-zim-domain protein 11 0.02 Orthogroups_2024-Update
Brara.F01223.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G03130.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G005954 No alias jasmonate-zim-domain protein 1 0.02 Orthogroups_2024-Update
LOC_Os03g08310 No alias ZIM domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436815g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Mp6g06230.1 No alias transcription factor (TIFY) 0.01 Orthogroups_2024-Update
PSME_00003980-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00014976-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00042224-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00049567-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Seita.2G388400.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.02 Orthogroups_2024-Update
Sobic.001G482600.1 No alias TIFY-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018467 CCT_CS 225 246
IPR010399 Tify_dom 145 175
No external refs found!