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  5. PSME_00022739-RA

PSME_00022739-RA


Description : (at3g10340 : 547.0) Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).; phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4898 Blast hits to 4876 proteins in 1415 species: Archae - 40; Bacteria - 2975; Metazoa - 80; Fungi - 127; Plants - 1177; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink). & (p53443|pal2_orysa : 538.0) Phenylalanine ammonia-lyase (EC 4.3.1.5) - Oryza sativa (Rice) & (reliability: 1094.0) & (original description: no original description)


Gene families : OG_42_0000392 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000392_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022739-RA
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi3g49250 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Bradi5g15830 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
GRMZM2G081582 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Glyma.03G181600 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Glyma.03G181700 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Glyma.10G209800 No alias phenylalanine ammonia-lyase 2 0.02 Orthogroups_2024-Update
Glyma.19G182300 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Glyma.20G180800 No alias phenylalanine ammonia-lyase 2 0.02 Orthogroups_2024-Update
HORVU6Hr1G058840.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.04 Orthogroups_2024-Update
LOC_Os02g41680 No alias phenylalanine ammonia-lyase, putative, expressed 0.02 Orthogroups_2024-Update
MA_123220g0010 No alias (p24481|pal1_petcr : 912.0) Phenylalanine ammonia-lyase... 0.04 Orthogroups_2024-Update
MA_15852g0010 No alias (p25872|pal1_tobac : 829.0) Phenylalanine ammonia-lyase... 0.04 Orthogroups_2024-Update
MA_73113g0010 No alias (p45733|pal3_tobac : 734.0) Phenylalanine ammonia-lyase... 0.03 Orthogroups_2024-Update
Mp4g14130.1 No alias Phenylalanine ammonia-lyase class 1 (Fragment)... 0.02 Orthogroups_2024-Update
PSME_00011716-RA No alias (at3g10340 : 932.0) Encodes PAL4, a putative a... 0.05 Orthogroups_2024-Update
Potri.006G126800 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Potri.016G091100 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Pp1s22_3V6 No alias phenylalanine ammonia-lyase 0.03 Orthogroups_2024-Update
Pp1s52_44V6 No alias phenylalanine ammonia-lyase 0.02 Orthogroups_2024-Update
Seita.1G240200.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Seita.7G168800.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.05 Orthogroups_2024-Update
Sobic.004G220600.2 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Solyc03g071860 No alias No description available 0.04 Orthogroups_2024-Update
Solyc03g071870 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *-* PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g078270 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *-* PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g056170 No alias phenylalanine ammonia-lyase 2 0.04 Orthogroups_2024-Update
Solyc09g007900 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g007920 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc10g011920 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** A0A124SBF6_CYNCS) 0.03 Orthogroups_2024-Update
Solyc10g086180 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL2_TOBAC) 0.03 Orthogroups_2024-Update
Sopen05g034580 No alias Aromatic amino acid lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 38 503
No external refs found!