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Description : (at5g16860 : 510.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 174.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1020.0) & (original description: no original description)
Gene families : OG_42_0012092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00023277-RA | |
| Cluster | HCCA clusters: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_15913g0010 | No alias | (at4g13650 : 505.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 105 | 152 |
| IPR002885 | Pentatricopeptide_repeat | 580 | 626 |
| IPR002885 | Pentatricopeptide_repeat | 681 | 728 |
| IPR002885 | Pentatricopeptide_repeat | 308 | 350 |
| IPR002885 | Pentatricopeptide_repeat | 206 | 254 |
| IPR002885 | Pentatricopeptide_repeat | 443 | 491 |
| IPR002885 | Pentatricopeptide_repeat | 383 | 408 |
| IPR002885 | Pentatricopeptide_repeat | 655 | 680 |
| IPR002885 | Pentatricopeptide_repeat | 411 | 441 |
| IPR002885 | Pentatricopeptide_repeat | 518 | 539 |
| IPR002885 | Pentatricopeptide_repeat | 547 | 577 |
| No external refs found! |