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  5. PSME_00025300-RA

PSME_00025300-RA


Description : (at2g29050 : 129.0) RHOMBOID-like 1 (RBL1); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 4 (TAIR:AT3G53780.2); Has 5724 Blast hits to 5720 proteins in 1694 species: Archae - 148; Bacteria - 3468; Metazoa - 523; Fungi - 153; Plants - 363; Viruses - 0; Other Eukaryotes - 1069 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)


Gene families : OG_42_0000533 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025300-RA
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
At1g52580 No alias RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0] 0.04 Orthogroups_2024-Update
At3g53780 No alias RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4] 0.03 Orthogroups_2024-Update
Bradi2g03110 No alias RHOMBOID-like 1 0.02 Orthogroups_2024-Update
Brara.G03538.1 No alias protease *(RBL) 0.02 Orthogroups_2024-Update
Glyma.09G143800 No alias RHOMBOID-like 2 0.02 Orthogroups_2024-Update
LOC_Os11g47840 No alias OsRhmbd18 - Putative Rhomboid homologue, expressed 0.04 Orthogroups_2024-Update
PSME_00007096-RA No alias (at2g29050 : 128.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00034704-RA No alias (at2g29050 : 143.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00044318-RA No alias (at1g63120 : 172.0) AtRBL2 has been identified as a... 0.04 Orthogroups_2024-Update
Potri.001G241300 No alias RHOMBOID-like 1 0.03 Orthogroups_2024-Update
Potri.002G090400 No alias Rhomboid-related intramembrane serine protease family protein 0.03 Orthogroups_2024-Update
Seita.9G567800.1 No alias protease *(RBL) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003352 regulation of cilium movement IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0032879 regulation of localization IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051270 regulation of cellular component movement IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0060632 regulation of microtubule-based movement IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 27 136
No external refs found!