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  5. PSME_00025694-RA

PSME_00025694-RA


Description : (at1g80170 : 422.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35336|pglr_actch : 419.0) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Actinidia chinensis (Kiwi) (Yangtao) & (reliability: 844.0) & (original description: no original description)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025694-RA
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
A4A49_04568 No alias polygalacturonase-2 0.02 Orthogroups_2024-Update
A4A49_21681 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
AC210013.4_FG017 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
At5g27530 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.14G044200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G275400 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G209800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G079140.6 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
LOC_Os03g59330 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g46510 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g10730 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
PSME_00023335-RA No alias (at1g80170 : 293.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.001G171900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G252900 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.016G054800 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
Seita.2G346300.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.9G044000.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Sobic.001G045400.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Sobic.001G045900.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.004G028700.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.006G178900.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc12g009420 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1) 0.02 Orthogroups_2024-Update
Sopen03g032290 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen08g016250 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 200 525
No external refs found!