1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025923-RA

PSME_00025923-RA


Description : (at1g80400 : 142.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 10084 Blast hits to 10056 proteins in 295 species: Archae - 0; Bacteria - 8; Metazoa - 2540; Fungi - 826; Plants - 5176; Viruses - 44; Other Eukaryotes - 1490 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)


Gene families : OG_42_0000431 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000431_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025923-RA
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G139941 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 Orthogroups_2024-Update
evm.model.tig00000093.104 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 354 395
IPR001841 Znf_RING 115 156
No external refs found!