1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025931-RA

PSME_00025931-RA


Description : (at4g02780 : 422.0) Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis; GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (o04408|ksa_pea : 389.0) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA) - Pisum sativum (Garden pea) & (reliability: 844.0) & (original description: no original description)


Gene families : OG_42_0001473 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025931-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
124329 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.06 Orthogroups_2024-Update
418910 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Orthogroups_2024-Update
MA_10425884g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_9198151g0010 No alias (at4g16730 : 143.0) In the Col ecotype, no functional... 0.06 Orthogroups_2024-Update
Mp7g00020.1 No alias ent-copalyl diphosphate synthase 0.02 Orthogroups_2024-Update
PSME_00027540-RA No alias (o04408|ksa_pea : 627.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00029318-RA No alias (o04408|ksa_pea : 388.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00030022-RA No alias (o04408|ksa_pea : 381.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00030139-RA No alias (at4g02780 : 384.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
Seita.2G144900.1 No alias ent-copalyl diphosphate synthase & EC_5.5 intramolecular... 0.03 Orthogroups_2024-Update
Seita.9G262400.1 No alias ent-copalyl diphosphate synthase & EC_5.5 intramolecular... 0.02 Orthogroups_2024-Update
Solyc08g005710 No alias Terpene synthase 41 (AHRD V3.3 *** R9R6F5_SOLPI) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 195 402
IPR005630 Terpene_synthase_metal-bd 445 707
No external refs found!