1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00026235-RA

PSME_00026235-RA


Description : (at4g02290 : 471.0) glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (q69nf5|gun23_orysa : 453.0) Endoglucanase 23 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 23) (OsGLU12) - Oryza sativa (Rice) & (reliability: 942.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026235-RA
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
99802 No alias glycosyl hydrolase 9C2 0.02 Orthogroups_2024-Update
Bradi1g44430 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
Bradi3g59810 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
Glyma.10G017000 No alias glycosyl hydrolase 9B13 0.02 Orthogroups_2024-Update
Glyma.11G101300 No alias glycosyl hydrolase 9C1 0.04 Orthogroups_2024-Update
HORVU6Hr1G022270.6 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g50490 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g53820 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g20540.1 No alias Endoglucanase 19 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
PSME_00008628-RA No alias (at1g70710 : 603.0) endo-1,4-beta-glucanase. Involved in... 0.05 Orthogroups_2024-Update
Potri.001G092200 No alias glycosyl hydrolase 9C2 0.02 Orthogroups_2024-Update
Potri.002G023900 No alias glycosyl hydrolase 9B5 0.02 Orthogroups_2024-Update
Potri.005G237700 No alias glycosyl hydrolase 9B5 0.02 Orthogroups_2024-Update
Potri.014G157600 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
Pp1s37_355V6 No alias endo-beta- -glucanase 0.03 Orthogroups_2024-Update
Seita.2G196500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G108700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G101900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g010210 No alias endo-1,4-beta-glucanase precursor (Cel2) 0.02 Orthogroups_2024-Update
Sopen04g034920 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update
Sopen07g033070 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 46 417
No external refs found!