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  5. Solyc02g069680

Solyc02g069680


Description : Vacuolar protein sorting-associated protein 2 homolog 2 (AHRD V3.3 *** VPS2B_ARATH)


Gene families : OG_42_0001019 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001019_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc02g069680
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
266789 No alias vacuolar protein sorting-associated protein 2.3 0.08 Orthogroups_2024-Update
A4A49_21866 No alias vacuolar protein sorting-associated protein 2-like 2 0.07 Orthogroups_2024-Update
At5g44560 No alias Vacuolar protein sorting-associated protein 2 homolog 2... 0.08 Orthogroups_2024-Update
Brara.I01850.1 No alias component *(VPS2/CHMP2) of ESCRT-III complex 0.15 Orthogroups_2024-Update
Glyma.15G192100 No alias SNF7 family protein 0.19 Orthogroups_2024-Update
Mp5g06990.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Orthogroups_2024-Update
Pp1s156_55V6 No alias at1g03950 f21m11_12 0.02 Orthogroups_2024-Update
Sopen02g018800 No alias Snf7 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
MF GO:0052736 beta-glucanase activity IEP Predicted GO
MF GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 21 189
No external refs found!