PSME_00027135-RA

Description : (at5g67510 : 172.0) Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT3G49910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q39411|rl26_brara : 150.0) 60S ribosomal protein L26 - Brassica rapa (Turnip) & (reliability: 344.0) & (original description: no original description)

Gene families : OG_42_0002250 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00027135-RA
Cluster	HCCA clusters: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
227399	No alias	Translation protein SH3-like family protein	0.09	Orthogroups_2024-Update
A4A49_01785	No alias	60s ribosomal protein l26-1	0.06	Orthogroups_2024-Update
A4A49_64025	No alias	60s ribosomal protein l26-1	0.09	Orthogroups_2024-Update
At5g67510	No alias	60S ribosomal protein L26-2...	0.03	Orthogroups_2024-Update
Brara.A02158.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Brara.C04297.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.I03333.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Cre01.g040000	No alias	Translation protein SH3-like family protein	0.13	Orthogroups_2024-Update
Glyma.11G048100	No alias	Translation protein SH3-like family protein	0.08	Orthogroups_2024-Update
Glyma.13G243100	No alias	Translation protein SH3-like family protein	0.03	Orthogroups_2024-Update
Glyma.13G245300	No alias	Translation protein SH3-like family protein	0.04	Orthogroups_2024-Update
Glyma.15G068500	No alias	Translation protein SH3-like family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G026880.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00486_0110	kfl00486_0110_v1.1	(at3g49910 : 157.0) Translation protein SH3-like family...	0.04	Orthogroups_2024-Update
MA_13141g0010	No alias	(at5g67510 : 168.0) Translation protein SH3-like family...	0.05	Orthogroups_2024-Update
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.02	Orthogroups_2024-Update
Potri.005G082600	No alias	Translation protein SH3-like family protein	0.02	Orthogroups_2024-Update
Potri.007G055900	No alias	Translation protein SH3-like family protein	0.09	Orthogroups_2024-Update
Potri.007G085200	No alias	Translation protein SH3-like family protein	0.04	Orthogroups_2024-Update
Pp1s120_90V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.15	Orthogroups_2024-Update
Pp1s13_138V6	No alias	60s ribosomal protein	0.15	Orthogroups_2024-Update
Pp1s30_298V6	No alias	60s ribosomal protein	0.08	Orthogroups_2024-Update
Pp1s59_51V6	No alias	K9I9.7; 60S ribosomal protein L26 (RPL26B) [KO:K02898]...	0.02	Orthogroups_2024-Update
Pp1s69_191V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.06	Orthogroups_2024-Update
Seita.5G096600.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Sobic.003G078200.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Solyc02g064670	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.15	Orthogroups_2024-Update
Solyc02g092430	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.1	Orthogroups_2024-Update
Solyc03g044000	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.04	Orthogroups_2024-Update
Sopen02g014760	No alias	KOW motif	0.11	Orthogroups_2024-Update
Sopen02g036980	No alias	KOW motif	0.03	Orthogroups_2024-Update
Sopen03g007800	No alias	KOW motif	0.05	Orthogroups_2024-Update
evm.model.contig_2053.5	No alias	(at5g67510 : 146.0) Translation protein SH3-like family...	0.15	Orthogroups_2024-Update
evm.model.tig00000144.60	No alias	(at3g49910 : 158.0) Translation protein SH3-like family...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	InterProScan predictions
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	Predicted GO
BP	GO:0034227	tRNA thio-modification	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005756	Ribosomal_L26/L24P_euk/arc	4	117
IPR005824	KOW	47	78

External Links

No external refs found!

PSME_00027135-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation