PSME_00027176-RA

Description : (at1g52880 : 226.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q52qh4|nac68_orysa : 185.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 448.0) & (original description: no original description)

Gene families : OG_42_0000084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000084_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00027176-RA
Cluster	HCCA clusters: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
147012	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
At3g15510	No alias	NAC transcription factor 56...	0.03	Orthogroups_2024-Update
Bradi1g17480	No alias	NAC domain containing protein 47	0.05	Orthogroups_2024-Update
Bradi1g24390	No alias	NAC domain containing protein 25	0.03	Orthogroups_2024-Update
Brara.F00162.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G02480.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G011598	No alias	NAC domain containing protein 47	0.03	Orthogroups_2024-Update
GRMZM2G068973	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.06G157400	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.06G248900	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.13G279900	No alias	NAC domain containing protein 3	0.03	Orthogroups_2024-Update
MA_18153g0010	No alias	(at1g52880 : 291.0) Transcription factor with a NAC...	0.03	Orthogroups_2024-Update
MA_75192g0010	No alias	(q52qh4\|nac68_orysa : 268.0) NAC domain-containing...	0.04	Orthogroups_2024-Update
PSME_00015911-RA	No alias	(at3g04070 : 259.0) NAC domain containing protein 47...	0.05	Orthogroups_2024-Update
PSME_00017053-RA	No alias	(at1g01720 : 241.0) Belongs to a large family of...	0.04	Orthogroups_2024-Update
PSME_00025049-RA	No alias	(q52qh4\|nac68_orysa : 235.0) NAC domain-containing...	0.04	Orthogroups_2024-Update
PSME_00035776-RA	No alias	(at3g15510 : 277.0) Note of caution: not to be confused...	0.03	Orthogroups_2024-Update
PSME_00036304-RA	No alias	(at1g52880 : 273.0) Transcription factor with a NAC...	0.03	Orthogroups_2024-Update
PSME_00037723-RA	No alias	(at1g52880 : 263.0) Transcription factor with a NAC...	0.02	Orthogroups_2024-Update
PSME_00039090-RA	No alias	(at1g01720 : 226.0) Belongs to a large family of...	0.03	Orthogroups_2024-Update
PSME_00050750-RA	No alias	(at1g52880 : 206.0) Transcription factor with a NAC...	0.04	Orthogroups_2024-Update
PSME_00051526-RA	No alias	(at1g01720 : 234.0) Belongs to a large family of...	0.04	Orthogroups_2024-Update
PSME_00055222-RA	No alias	(at1g01720 : 234.0) Belongs to a large family of...	0.03	Orthogroups_2024-Update
Potri.001G404100	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.006G129400	No alias	NAC domain containing protein 25	0.02	Orthogroups_2024-Update
Potri.008G089000	No alias	NAC-like, activated by AP3/PI	0.02	Orthogroups_2024-Update
Potri.011G123300	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
Potri.019G031400	No alias	NAC domain containing protein 47	0.04	Orthogroups_2024-Update
Seita.2G086600.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Seita.3G237100.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Seita.5G069100.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G358900.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G008100.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Seita.9G039200.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.008G094700.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Solyc06g060230	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen05g003630	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0004402	histone acetyltransferase activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
MF	GO:0008080	N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0008156	negative regulation of DNA replication	IEP	Predicted GO
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Predicted GO
MF	GO:0016407	acetyltransferase activity	IEP	Predicted GO
MF	GO:0030599	pectinesterase activity	IEP	Predicted GO
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0042545	cell wall modification	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0045005	DNA-dependent DNA replication maintenance of fidelity	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0048478	replication fork protection	IEP	Predicted GO
BP	GO:0048523	negative regulation of cellular process	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predicted GO
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Predicted GO
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Predicted GO
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	34	144

External Links

No external refs found!

PSME_00027176-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation