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  5. PSME_00027352-RA

PSME_00027352-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000723 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027352-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At4g39720 No alias VQ motif-containing protein [Source:TAIR;Acc:AT4G39720] 0.03 Orthogroups_2024-Update
Glyma.04G103300 No alias VQ motif-containing protein 0.04 Orthogroups_2024-Update
Glyma.05G133000 No alias VQ motif-containing protein 0.03 Orthogroups_2024-Update
Glyma.06G104400 No alias VQ motif-containing protein 0.03 Orthogroups_2024-Update
Glyma.08G087400 No alias VQ motif-containing protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G003880.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g07690 No alias VQ domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430864g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_84113g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Seita.6G141800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g068460 No alias LOW QUALITY:VQ motif-containing protein, putative (AHRD... 0.03 Orthogroups_2024-Update
Sopen02g010250 No alias VQ motif 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR008889 VQ 174 200
No external refs found!