Description : (at4g17300 : 564.0) Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.; NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19374 Blast hits to 17086 proteins in 2835 species: Archae - 447; Bacteria - 14373; Metazoa - 505; Fungi - 670; Plants - 294; Viruses - 0; Other Eukaryotes - 3085 (source: NCBI BLink). & (reliability: 1128.0) & (original description: no original description)
Gene families : OG_42_0001608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001608_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00027565-RA | |
Cluster | HCCA clusters: Cluster_224 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.05G224000 | No alias | Class II aminoacyl-tRNA and biotin synthetases... | 0.03 | Orthogroups_2024-Update | |
Potri.017G028800 | No alias | Class II aminoacyl-tRNA and biotin synthetases... | 0.04 | Orthogroups_2024-Update | |
Sobic.001G420400.1 | No alias | asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
MF | GO:0004565 | beta-galactosidase activity | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
CC | GO:0009341 | beta-galactosidase complex | IEP | Predicted GO |
MF | GO:0015925 | galactosidase activity | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004364 | aa-tRNA-synt_II | 81 | 352 |
No external refs found! |