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  5. Sopen06g001010

Sopen06g001010


Description : IBR domain


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g001010
Cluster HCCA clusters: Cluster_349

Target Alias Description ECC score Gene Family Method Actions
At3g45580 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Bradi4g30420 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s15_162V6 No alias zinc finger 0.02 Orthogroups_2024-Update
Solyc01g110100 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G53690.1) 0.02 Orthogroups_2024-Update
evm.model.tig00000123.19 No alias (at4g19670 : 110.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 162 283
IPR002867 IBR_dom 295 346
IPR002867 IBR_dom 364 414
No external refs found!