PSME_00027804-RA

Description : (at4g02780 : 304.0) Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis; GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q39548|ksb_cucma : 298.0) Ent-kaurene synthase B, chloroplast precursor (EC 4.2.3.19) (KSB) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 608.0) & (original description: no original description)

Gene families : OG_42_0001473 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00027804-RA
Cluster	HCCA clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
124329	No alias	Terpenoid cyclases/Protein prenyltransferases superfamily protein	0.03	Orthogroups_2024-Update
418910	No alias	Terpenoid cyclases/Protein prenyltransferases superfamily protein	0.03	Orthogroups_2024-Update
MA_9198151g0010	No alias	(at4g16730 : 143.0) In the Col ecotype, no functional...	0.03	Orthogroups_2024-Update
Mp7g00020.1	No alias	ent-copalyl diphosphate synthase	0.04	Orthogroups_2024-Update
PSME_00014435-RA	No alias	(at4g02780 : 448.0) Catalyzes the conversion of...	0.05	Orthogroups_2024-Update
PSME_00029318-RA	No alias	(o04408\|ksa_pea : 388.0) Ent-kaurene synthase A,...	0.05	Orthogroups_2024-Update
PSME_00030022-RA	No alias	(o04408\|ksa_pea : 381.0) Ent-kaurene synthase A,...	0.05	Orthogroups_2024-Update
Seita.9G351400.1	No alias	ent-copalyl diphosphate synthase & EC_5.5 intramolecular...	0.03	Orthogroups_2024-Update
Solyc06g084240	No alias	copalyl diphosphate synthase	0.03	Orthogroups_2024-Update
Solyc08g005710	No alias	Terpene synthase 41 (AHRD V3.3 *** R9R6F5_SOLPI)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0010333	terpene synthase activity	IEA	InterProScan predictions
MF	GO:0016829	lyase activity	IEA	InterProScan predictions
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
MF	GO:0004568	chitinase activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008061	chitin binding	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005630	Terpene_synthase_metal-bd	299	561
IPR001906	Terpene_synth_N	58	256

External Links

No external refs found!

PSME_00027804-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation