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  5. PSME_00028271-RA

PSME_00028271-RA


Description : (at5g05390 : 745.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40588|aso_tobac : 256.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Nicotiana tabacum (Common tobacco) & (reliability: 1490.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028271-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_13303 No alias laccase-7 0.03 Orthogroups_2024-Update
A4A49_15209 No alias laccase-4 0.04 Orthogroups_2024-Update
A4A49_18568 No alias laccase-4 0.02 Orthogroups_2024-Update
A4A49_64623 No alias laccase-5 0.04 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.04 Orthogroups_2024-Update
At3g09220 No alias Laccase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR40] 0.03 Orthogroups_2024-Update
At5g01190 No alias Laccase-10 [Source:UniProtKB/Swiss-Prot;Acc:Q6ID18] 0.04 Orthogroups_2024-Update
At5g03260 No alias Laccase-11 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZA1] 0.06 Orthogroups_2024-Update
At5g05390 No alias Laccase-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB5] 0.03 Orthogroups_2024-Update
At5g48100 No alias Laccase-15 [Source:UniProtKB/Swiss-Prot;Acc:Q84J37] 0.02 Orthogroups_2024-Update
At5g60020 No alias Laccase-17 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD5] 0.03 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.06 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.06 Orthogroups_2024-Update
Bradi2g54690 No alias laccase 17 0.04 Orthogroups_2024-Update
Brara.H02436.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
Brara.J01366.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Cre08.g360550 No alias Function unknown 0.02 Orthogroups_2024-Update
GRMZM2G072808 No alias laccase 17 0.02 Orthogroups_2024-Update
Glyma.01G112600 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.03G077900 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
Glyma.08G359100 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.11G069600 No alias laccase 11 0.03 Orthogroups_2024-Update
Glyma.18G065100 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.18G177200 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.18G193300 No alias laccase 7 0.03 Orthogroups_2024-Update
HORVU3Hr1G086200.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
HORVU4Hr1G059930.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
MA_57140g0020 No alias (at5g05390 : 788.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_75861g0010 No alias (at1g18140 : 648.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00008221-RA No alias (at5g05390 : 632.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00015371-RA No alias (at5g05390 : 674.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00018932-RA No alias (at5g05390 : 800.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00024478-RA No alias (at5g05390 : 702.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00028664-RA No alias (at5g05390 : 686.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
PSME_00031239-RA No alias (at1g18140 : 634.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00042485-RA No alias (at5g05390 : 782.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00044158-RA No alias (at2g40370 : 673.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00044448-RA No alias (at5g05390 : 808.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.006G087500 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Potri.008G073700 No alias laccase 5 0.02 Orthogroups_2024-Update
Potri.010G193100 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Potri.011G120300 No alias laccase 17 0.04 Orthogroups_2024-Update
Potri.016G106000 No alias laccase 7 0.06 Orthogroups_2024-Update
Pp1s175_122V6 No alias laccase 90a 0.02 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.001G403100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Sobic.001G422300.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.003G352700.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.003G353200.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.009G162800.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Solyc09g010990 No alias Laccase (AHRD V3.3 *** M1AHK0_SOLTU) 0.04 Orthogroups_2024-Update
Solyc09g014240 No alias Laccase (AHRD V3.3 *** P93366_TOBAC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 43 155
IPR011706 Cu-oxidase_2 421 554
IPR001117 Cu-oxidase 169 318
No external refs found!