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  5. Solyc02g069770

Solyc02g069770


Description : WD40-repeat domain-contaning protein


Gene families : OG_42_0006077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g069770
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At4g05410 No alias U3 snoRNP-associated protein-like YAO... 0.12 Orthogroups_2024-Update
Bradi4g01810 No alias Transducin/WD40 repeat-like superfamily protein 0.11 Orthogroups_2024-Update
Brara.C02749.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.07 Orthogroups_2024-Update
Brara.I02128.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.03 Orthogroups_2024-Update
Cre06.g278175 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G015005 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G010440.3 No alias SSU processome assembly factor *(RRP9/YAO1) 0.05 Orthogroups_2024-Update
Kfl00603_0070 kfl00603_0070_v1.1 (at4g05410 : 283.0) Encodes a nucleolar protein with... 0.01 Orthogroups_2024-Update
Mp8g03800.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.05 Orthogroups_2024-Update
Potri.007G107900 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
Pp1s211_106V6 No alias u3 snornp-associated-like protein 0.03 Orthogroups_2024-Update
Pp1s37_119V6 No alias u3 snornp-associated-like protein 0.08 Orthogroups_2024-Update
Seita.9G158600.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.15 Orthogroups_2024-Update
Sobic.001G157300.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.07 Orthogroups_2024-Update
Sopen02g018930 No alias WD domain, G-beta repeat 0.15 Orthogroups_2024-Update
evm.model.tig00021179.21 No alias (at4g05410 : 272.0) Encodes a nucleolar protein with... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 258 295
IPR001680 WD40_repeat 342 376
IPR001680 WD40_repeat 223 253
No external refs found!