1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00029098-RA

PSME_00029098-RA


Description : (o04886|pme1_citsi : 512.0) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (at3g14310 : 510.0) encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.; pectin methylesterase 3 (PME3); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to nematode; LOCATED IN: cell wall, apoplast, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 2 (TAIR:AT1G53830.1); Has 3052 Blast hits to 2982 proteins in 347 species: Archae - 6; Bacteria - 639; Metazoa - 1; Fungi - 199; Plants - 2181; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). & (reliability: 1020.0) & (original description: no original description)


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029098-RA
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
A4A49_30247 No alias putative pectinesterasepectinesterase inhibitor 28 0.02 Orthogroups_2024-Update
A4A49_33399 No alias putative pectinesterasepectinesterase inhibitor 58 0.02 Orthogroups_2024-Update
At2g26440 No alias Probable pectinesterase/pectinesterase inhibitor 12... 0.02 Orthogroups_2024-Update
At3g06830 No alias Probable pectinesterase/pectinesterase inhibitor 23... 0.04 Orthogroups_2024-Update
At5g51500 No alias Probable pectinesterase/pectinesterase inhibitor 60... 0.04 Orthogroups_2024-Update
Brara.H01111.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
GRMZM2G125356 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.03G029400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.07G024200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.07G024300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.08G044000 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Orthogroups_2024-Update
Glyma.15G184100 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Orthogroups_2024-Update
Glyma.17G028600 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
MA_2253g0010 No alias (at5g53370 : 385.0) pectin methylesterase PCR fragment F... 0.03 Orthogroups_2024-Update
PSME_00025865-RA No alias (at5g53370 : 368.0) pectin methylesterase PCR fragment F... 0.03 Orthogroups_2024-Update
Potri.006G134500 No alias pectin methylesterase 44 0.02 Orthogroups_2024-Update
Seita.3G370800.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Sopen02g024920 No alias Pectinesterase 0.04 Orthogroups_2024-Update

GO
Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 224 521
IPR006501 Pectinesterase_inhib_dom 32 181
No external refs found!